Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00878 ATGGATTTATGTATCTGTTTAATTTTTTTTACTTTATTGTCGAACTTCTCGAATAAGCTTGGCCCCATGGCAACCCATCCTGGAAAACAAGCTCCTTCGAATGGGTCTGTCTATGTATGCAACTTGCCCTACGGAACTGACGAAACTATGTTGGCTGAATATTTTGGCACCATTGGATTAGTGAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACATATGAAGACCCACATGCTGCTATAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATATAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACATATAATTCAGCAGCAGTAGAACCAGTAGTTGCCGGTAATGTTGTCGGGTTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGCCAAACTGATCCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCCGAATACAAGCAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCGTGTAACCGCTGTGGAACTGCCCGTCCTGCTGGTGCTGCTGGAATTTCCGGAGCTGGTGGCCGTGGCAAGGGACGAGCTGCTGGACAAGAACCAGGGGGTGTTGGCCGGCCAGTTGGTGGAGGACTATTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATAAACTGGGCAAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGGCATAATGAAGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACCAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGATTCCTGGTTCAGGACGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACAGGGATGGTAGAGAAAGTAGAGATAGAGGAAGGGAACGTAATGATGGGGAGAGCAGGAACAGAGATCGAAGTGACAAAGAGAGGCAAAGCAGTTGGAACAGGGACAGGGGAAGAGATCGAGATCGAGACTGGGACTATGTTGATCGAGATAGAGATTATGGGCGAGATCGGGACCGTAGTAGACACCGATATTAA 1230 0.4537 MDLCICLIFFTLLSNFSNKLGPMATHPGKQAPSNGSVYVCNLPYGTDETMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAIAAVEWFNNKDFHGNIIGVFIAESKNKDDQTYNSAAVEPVVAGNVVGLEETTKDVNGGSGRGRGQTDPSGKAWQQDGDWLCPNTSSCSNVNFAFRGACNRCGTARPAGAAGISGAGGRGKGRAAGQEPGGVGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGIPGSGRAGWEVEELGIDRDGRESRDRGRERNDGESRNRDRSDKERQSSWNRDRGRDRDRDWDYVDRDRDYGRDRDRSRHRY* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00878 409 Coils Coil 282 302 - -
Lapu11g00878 409 SUPERFAMILY Ran binding protein zinc finger-like 166 205 IPR036443 -
Lapu11g00878 409 SMART zf_4 240 264 IPR001876 -
Lapu11g00878 409 SMART zf_4 174 201 IPR001876 -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 155 170 - -
Lapu11g00878 409 ProSiteProfiles Zinc finger RanBP2 type profile. 172 204 IPR001876 -
Lapu11g00878 409 FunFam TATA-binding protein-associated factor 2N isoform X1 170 205 - -
Lapu11g00878 409 CDD RRM_SARFH 37 119 - -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 148 170 - -
Lapu11g00878 409 SMART rrm1_1 36 117 IPR000504 GO:0003723
Lapu11g00878 409 ProSitePatterns Zinc finger RanBP2-type signature. 242 261 IPR001876 -
Lapu11g00878 409 ProSiteProfiles Zinc finger RanBP2 type profile. 238 267 IPR001876 -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 269 302 - -
Lapu11g00878 409 SUPERFAMILY Ran binding protein zinc finger-like 234 268 IPR036443 -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 339 409 - -
Lapu11g00878 409 FunFam Zinc finger Ran-binding domain-containing protein 2 233 267 - -
Lapu11g00878 409 Pfam Zn-finger in Ran binding protein and others 173 203 IPR001876 -
Lapu11g00878 409 Pfam Zn-finger in Ran binding protein and others 241 267 IPR001876 -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 209 230 - -
Lapu11g00878 409 FunFam HIV Tat-specific factor 1 34 118 - -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 279 302 - -
Lapu11g00878 409 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 148 405 - -
Lapu11g00878 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 112 IPR000504 GO:0003723
Lapu11g00878 409 Gene3D - 169 206 - -
Lapu11g00878 409 Gene3D - 237 268 - -
Lapu11g00878 409 MobiDBLite consensus disorder prediction 317 409 - -
Lapu11g00878 409 Gene3D - 34 117 IPR012677 -
Lapu11g00878 409 SUPERFAMILY RNA-binding domain, RBD 32 124 IPR035979 GO:0003676
Lapu11g00878 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 121 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00878 - - gmx:100780819 578.556