Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00859 ATGGTAAGGGATATTGTTGGCGTAAGAAACAGTGAAGTGAAAGAGGTGGGAAGAAAAGGAAAGGAAAAGCAAAAGAAGAACCCAGATGAACACATCCACGCACTCAGCTTCACAACAAACTCAACCAATTTGGTGTTTTTGAAACTGAATCAATCTCTGTTCTTTGATTATTCTTGGGTCTTCCTCATGGATCGCCGTCTTCTCTTTCTCATTATTCTTAGCCTTGTGGCATTATCTTTCCTCTCAGAGGTGCAACCAGCATCCTTCAAGATTGTGAACAAGTGTCGCCACACAGTATGGCCGGGATTACTCTCCGGCGCCACCTCGCCGCCGCTTCCCACCACCGGATTCGCCCTCCAGAGCGGAAAATCGAAGACATTAAAAATCCCGAAATCTTGGTCGGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACCCGGACGGAAAGTTCTCTTGCGCCACCGCCGACTGCGGCTCTGGCAAAGTAGAGTGCATCGGCGGAGCCAAGCCGCCGGCGACATTGGCGGAGTTCACCCTGAACGGCGCCGATGGATTGGACTTCTACGACGTCAGTTTGGTCGACGGTTACAACCTTCCAATGCTGATCGTAGCGAAGGACGGCACCAGGGGTGGGTGCAGCGCCACGGGGTGTCTCGTCGACCTCAACGGCGGGTGTCCAGCGGAGCTGAGGGTTGCGCGCGTGAACGGAAGCCGCAGGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGTGATCCTCGTTTTTGCTGCAGCGAGGCATACTCGACGCCTGACACGTGCGGGCCTTCTCTTTATTCGCTGTTCTTCAAGCACGCTTGCCCACGCGCGTACAGCTACGCGTATGATGACAAGACCAGCACCTACACATGTGCCTCTGCTAACTATTTGATCATTTTCTGCCCCTTGCCCTACACCAGCCAAAAACTGTTGGGAGCACGTAAAGATGGGGCAGAACTTCCTCTGGTAAACAAAACTATGATGTACTTATCAAGGCTACAGTCAAGTGGTTCTTCACCATCAGGTGTGGTGGTTCAAACGCAGAGTATAACTTATGTTGCCTCTATTTTGGTGGCTCTGTTCCTGTTCTGCCCTCTCTCCAGCACCATTTATGGATTATGTTTGCTTGGACATTTCAGATAG 1164 0.5266 MVRDIVGVRNSEVKEVGRKGKEKQKKNPDEHIHALSFTTNSTNLVFLKLNQSLFFDYSWVFLMDRRLLFLIILSLVALSFLSEVQPASFKIVNKCRHTVWPGLLSGATSPPLPTTGFALQSGKSKTLKIPKSWSGRIWARTLCGQDPDGKFSCATADCGSGKVECIGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSATGCLVDLNGGCPAELRVARVNGSRRSVACRSACEAFGDPRFCCSEAYSTPDTCGPSLYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKLLGARKDGAELPLVNKTMMYLSRLQSSGSSPSGVVVQTQSITYVASILVALFLFCPLSSTIYGLCLLGHFR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00859 387 FunFam THAUMATIN-LIKE PROTEIN 1 87 309 - -
Lapu11g00859 387 CDD TLP-PA 88 308 - -
Lapu11g00859 387 SMART tha2 89 309 IPR001938 -
Lapu11g00859 387 SUPERFAMILY Osmotin, thaumatin-like protein 88 309 IPR037176 -
Lapu11g00859 387 PANTHER OS03G0233200 PROTEIN 74 309 IPR001938 -
Lapu11g00859 387 PRINTS Pathogenesis-related protein signature 299 308 IPR001938 -
Lapu11g00859 387 PRINTS Pathogenesis-related protein signature 149 178 IPR001938 -
Lapu11g00859 387 PRINTS Pathogenesis-related protein signature 136 147 IPR001938 -
Lapu11g00859 387 PRINTS Pathogenesis-related protein signature 88 100 IPR001938 -
Lapu11g00859 387 PRINTS Pathogenesis-related protein signature 187 203 IPR001938 -
Lapu11g00859 387 Pfam Thaumatin family 93 309 IPR001938 -
Lapu11g00859 387 Gene3D Thaumatin 87 309 IPR037176 -
Lapu11g00859 387 ProSitePatterns Thaumatin family signature. 149 165 IPR017949 -
Lapu11g00859 387 ProSiteProfiles Thaumatin family profile. 87 309 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00859 Lapu-Chr11 11239631 11242151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00859 67 325 Receptor kinase-like Gene Family AT5G38280 48.855 1.29e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00859 - - gmx:100802252 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00859 11 11239631 11242151 Lapu11g00859 11 11239631 11242151 ECH