Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00858 ATGGATCTCAGACCATTCTCATTTCTCACTCTCATTGCTCTCCTACTCTTCACTCCCCCAGGGGTGATGGCTGCCACCTTCACATTCGTTAACCGATGTGATTACACAGTGTGGCCAGGCATTCTCGCAAATGCCGGTAGCCCACCACTCCAAAGCACCGGCTTTGAGCTTCCCAAGGACACTTCTCGCACCTTCCAAGCTTCCACCGGTTGGTCCGGTCGTTTCTGGGCGCGAACCGGTTGCACTTTCGACGGATCCGGATCCGGTTCCTGCCTCACTGGCGACTGCGGCTCCGGTCAAGTCGAATGCAACGGCGCCGGAGCAGCCCCGCCGGCCACCCTCGCTGAGTTCACTCTGGGCACTGGAGGCCAGGACTTCTACGACGTCAGCCTCGTCGACGGCTACAACCTTCCCATGATCGTGGAGGGCACTGGCGGGTCCGGTCTGTGCGCCTCCACGGGCTGCACGTCGGATCTGAACCAACAATGCCCGGCGGAGCTGAGAGCCTCTGAGGGAAGCGCGTGCAAGAGCGCGTGTGAGGCTTTTGGTAGCCCTGAGTACTGTTGCAGCGGCGCGTATGGATCACCCGCCACCTGTAGGCCCTCCATTTACTCGGAGATGTTCAAGGCTGCTTGCCCCAGATCGTATAGCTACGCATACGACGACGCTACCAGTACTTTTACGTGTACCGGCGCTGATTATACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCTTCACGAGATACCACCAACCCCATGCCCTCAACATCATCACAAGGGTCAGGGACAATGACAGGAACAGTGACAGGAACGGGAACAGGAATGGGAACCGAAGGAGGAGCAGTGGTGTACTCGGGTGCGGACAACGGCGTTGTGTATAACTCCGTTACAGATTCCGGGTCAAGTTCAGGATCTGCAGGAGAAACAATGCTTGCAGATGGGTCATATTTAGCTGGATTGGCCATGGGAGAGTCGTCCCCCAGAAGAACAGTTTCCATGGCGTTTGTGTACTCTGCTAGCCTTTTGCTTATTTTCACCTTGCTTTAG 1053 0.5632 MDLRPFSFLTLIALLLFTPPGVMAATFTFVNRCDYTVWPGILANAGSPPLQSTGFELPKDTSRTFQASTGWSGRFWARTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCASTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTTNPMPSTSSQGSGTMTGTVTGTGTGMGTEGGAVVYSGADNGVVYNSVTDSGSSSGSAGETMLADGSYLAGLAMGESSPRRTVSMAFVYSASLLLIFTLL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00858 350 Gene3D Thaumatin 25 240 IPR037176 -
Lapu11g00858 350 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Lapu11g00858 350 SMART tha2 27 240 IPR001938 -
Lapu11g00858 350 FunFam THAUMATIN-LIKE PROTEIN 1 25 240 - -
Lapu11g00858 350 MobiDBLite consensus disorder prediction 241 274 - -
Lapu11g00858 350 CDD TLP-PA 26 239 - -
Lapu11g00858 350 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lapu11g00858 350 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Lapu11g00858 350 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lapu11g00858 350 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lapu11g00858 350 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lapu11g00858 350 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lapu11g00858 350 Pfam Thaumatin family 31 240 IPR001938 -
Lapu11g00858 350 PANTHER OS03G0233200 PROTEIN 12 240 IPR001938 -
Lapu11g00858 350 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00858 Lapu-Chr11 11232601 11235551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00858 9 269 Receptor kinase-like Gene Family AT5G38280 46.182 2.78e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00858 - - gmx:100801173 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00858 11 11232601 11235551 Lapu11g00858 11 11232601 11235551 ECH