Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00848 ATGGGTTTCTTTAGTACCATTTTGGGGTTTTTCGGATTTGGGGTTGGGGTTTCGATTGGTCTTGTGGCTGGCTATTTTCTATTTATCTACTTTCAACCCAATAATGTTGAGGATCCTGAAATCAAACCATTGGTGGAGCAAGAGCAAGAGACTCTGCAGCGGATGTTTCCAGAGATTCCTCTTTGGATAAAAAATCCGGATTTCGATCGGCTCGACTGGCTCAACAAGTTTTTAGAGTATATGTGGCCGTATCTTGATAAGGCAATTTGCAAGACTGCTAGGAACATTGCCAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAAACACTCACGCTGGGTTCACTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTGACTGATGAGAAGGAGTTAATTGTGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTAGATTTGCAAGTTTTCCTATTGCCTCGCATTACTTTGAAGCCTTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATATATGTCTCGCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCAGGCGTCTATAGGATCGTTCAGGAGCTTATCAAAGATCAGGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCCAGTTTTAGATATGTCAAAAGCCTTGAAGAGACCTGTTGGGATTTTACATGTAAAGGTTCTTCATGCAATGAAGCTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGTTAAAGCTTACTGAGGATAAATTGCCATCGAAAAAGACTAGTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATTTGATCGTTAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAACATGACAAGATGGGTATGAATGTGATATCTTTAAAAGAACTTTCCCCTGAAGAGCCTAAACGTTTTACTCTTGACCTCCTAAAAAACATGGATCCCAATGATGTCCAAAATGAGAAGTCACGTGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAAGAGGAGGATTTGGCCAAGGGGTTTGAAGAGACACAAACAGTGCCAAAAGCTCCTGAAGGTACTCCAGATGGTGGAGGTTTGCTTGTAGTTATAGTTCATGAAGCTCAAGATGTCGAAGGGAAGTATCACACTAATCCACATGTCCGACTTATTTTCAGAGGGGAGGAGAAAAAAACTAAGCGCATTAAAAAAAATAGAGATCCAAGATGGGAAGACGAGTTCCATTTTATGGTGGATGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTCTCAGCACGTCATCACGAAACCTGCTCCACCAAAAGGAATCACTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAATGAGAGGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGGTAGAGTTGCAGTGGAGAACTTCACAAGCATGA 1620 0.4111 MGFFSTILGFFGFGVGVSIGLVAGYFLFIYFQPNNVEDPEIKPLVEQEQETLQRMFPEIPLWIKNPDFDRLDWLNKFLEYMWPYLDKAICKTARNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIVEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLWPKTLEVPVLDMSKALKRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTSVKHKNLNPEWNEEFNLIVKDPDSQVLEINVYDWEQVGKHDKMGMNVISLKELSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLAKGFEETQTVPKAPEGTPDGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFHFMVDEPPTNDRLHVEVLSTSSRNLLHQKESLGYIDINLGDVVANKRINERYHLIDSKNGRLQVELQWRTSQA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00848 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Lapu11g00848 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Lapu11g00848 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Lapu11g00848 539 CDD C2 262 364 - -
Lapu11g00848 539 Gene3D C2 domain 256 409 IPR035892 -
Lapu11g00848 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Lapu11g00848 539 CDD SMP_SYT 60 248 - -
Lapu11g00848 539 PRINTS C2 domain signature 304 317 IPR000008 -
Lapu11g00848 539 PRINTS C2 domain signature 326 334 IPR000008 -
Lapu11g00848 539 PRINTS C2 domain signature 277 289 IPR000008 -
Lapu11g00848 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Lapu11g00848 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lapu11g00848 539 Gene3D C2 domain 419 537 IPR035892 -
Lapu11g00848 539 FunFam Extended synaptotagmin-2 419 536 - -
Lapu11g00848 539 FunFam Synaptotagmin-2 isoform A 255 410 - -
Lapu11g00848 539 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Lapu11g00848 539 SMART C2_3c 261 361 IPR000008 -
Lapu11g00848 539 SMART C2_3c 419 517 IPR000008 -
Lapu11g00848 539 Pfam C2 domain 260 360 IPR000008 -
Lapu11g00848 539 Pfam C2 domain 419 520 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00848 Lapu-Chr11 11144270 11152236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00848 255 527 Lipid Metabolism Gene Families AT3G61300 27.241 1.98e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00848 - - gmx:100781189 1044.65