Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00841 ATGGCGGAAGAGTACGATGAAGGTGAAGTAGAAGAAGAGTTCTCCGTCTGGAAGAAGAACACTCCTCTGTTGTACGATTTGTTCATTTCTCAGCCTCTTCAATGGCCCTCTCTCACCGTTCACTGGCTTCCTTCCTCTCCCCAACTCCACTCCCACCCTTCCTTCAATCTCCACAAACTCCTCCTTGCCACCCACACTGCCCAAGGAGAACCCAATTTCCTTATGCTCGCCGACGCATCCCTTCCCGCTGACACCTCACAACCCGTCGTCGCCACCGATCCTAACGATCCTGTTCTCCCCAAGGTAGAAATTTCCCAAAGGGTTGCTGTTGATGGGGAGGTGAATCGAGCCCGTTGTATGCCGCAGAACCCTGGTATTGTTGCTGCAAAGACATGTAATTCTGAGGTTTATGTGTTCGATTTCACCAAGCAACGCGGGAGTGAGTTTGCCCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGCTATGGTTTATCTTGGAGCCCTTTTAAGAGTGGGTATCTTTTGAGTGGTTCGCATGACCATAAGATTTGCTTGTGGGATGTGCCTGCTGCTTCTCAAGAGAATGTGCTTGATGCAGTTCATGTTTACGAGGGTCATGAGAGTGTGGTTGAAGATGTGTCGTGGAATATGAAGGATGAGAATCTGTTTGGATCTGTTGGAGATGACTGTAAATTGATCATTTGGGACTTACGGACAAACAAACCCCAACAATCTGTCAAACCACATGAAAATGAGGTTAACTTTCTTTCGTTCAGTCCATATAATGAGTGGATTTTGGCTACAGCATCTTCTGATACAACTGTTGGTCTCTTTGACACTCGGAAGCTGGCATTTCCACTACATGTTTTAAGTAGCCACACGGATGAAGTATTCCAGGTTGAGTGGGATCCTAATCACGAGACTGTGTTGGCATCATCTGGCGCTGACAGACGGCTCATGGTTTGGGACCTTAACAGGGTCGGAGATGAGCAAATAGAGGGAGATGGTGAGGGTGGCCCTCCTGAACTACTCTTCTCTCACGGAGGCCACAAAGGGAAAATATCAGATTTTTCATGGAACAGAAATCAGCCATGGGTTATCTCAAGCGTAGCTGAGGACAATTCTTTCCATGTATGGCAAATGGCAGAGAGCATTTACAATGATGGAGACGATGACAACATGTGGACGGCCAATGATTAA 1203 0.4722 MAEEYDEGEVEEEFSVWKKNTPLLYDLFISQPLQWPSLTVHWLPSSPQLHSHPSFNLHKLLLATHTAQGEPNFLMLADASLPADTSQPVVATDPNDPVLPKVEISQRVAVDGEVNRARCMPQNPGIVAAKTCNSEVYVFDFTKQRGSEFAPDLRLRGHDKEGYGLSWSPFKSGYLLSGSHDHKICLWDVPAASQENVLDAVHVYEGHESVVEDVSWNMKDENLFGSVGDDCKLIIWDLRTNKPQQSVKPHENEVNFLSFSPYNEWILATASSDTTVGLFDTRKLAFPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTAND* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00841 400 SMART WD40_4 197 237 IPR001680 GO:0005515
Lapu11g00841 400 SMART WD40_4 240 280 IPR001680 GO:0005515
Lapu11g00841 400 SMART WD40_4 100 140 IPR001680 GO:0005515
Lapu11g00841 400 SMART WD40_4 284 324 IPR001680 GO:0005515
Lapu11g00841 400 SMART WD40_4 148 188 IPR001680 GO:0005515
Lapu11g00841 400 SMART WD40_4 341 381 IPR001680 GO:0005515
Lapu11g00841 400 PANTHER WD40 REPEAT FAMILY 2 393 - -
Lapu11g00841 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 246 IPR001680 GO:0005515
Lapu11g00841 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 189 - -
Lapu11g00841 400 Pfam WD domain, G-beta repeat 201 237 IPR001680 GO:0005515
Lapu11g00841 400 Pfam WD domain, G-beta repeat 345 380 IPR001680 GO:0005515
Lapu11g00841 400 Pfam WD domain, G-beta repeat 156 188 IPR001680 GO:0005515
Lapu11g00841 400 Pfam WD domain, G-beta repeat 242 280 IPR001680 GO:0005515
Lapu11g00841 400 Pfam WD domain, G-beta repeat 287 324 IPR001680 GO:0005515
Lapu11g00841 400 FunFam WD-40 repeat-containing protein MSI1 1 399 - -
Lapu11g00841 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 197 IPR001680 GO:0005515
Lapu11g00841 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 326 IPR001680 GO:0005515
Lapu11g00841 400 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Lapu11g00841 400 PRINTS G protein beta WD-40 repeat signature 175 189 IPR020472 -
Lapu11g00841 400 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Lapu11g00841 400 ProSitePatterns Trp-Asp (WD) repeats signature. 175 189 IPR019775 -
Lapu11g00841 400 SUPERFAMILY WD40 repeat-like 112 382 IPR036322 GO:0005515
Lapu11g00841 400 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Lapu11g00841 400 Gene3D - 1 398 IPR015943 GO:0005515
Lapu11g00841 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 326 - -
Lapu11g00841 400 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 12 82 IPR022052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00841 Lapu-Chr11 11087181 11090463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00841 204 383 Miscellaneous Gene Families AT5G08390 20.556 6.08e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00841 K10752 - gmx:100791834 737.258