Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00836 ATGGAAGTTAACCTCTCTCTCAACCGCCACCGCTCCCTCCCTCTAACCTCCCGCTCGCCCTCCCTCTCCGCTCTCCGCACTCGCTTCCTCGCCTCCACTCACTCTCTCCGTCCCCCTCCCACCCCACCCTCCCTTCGCTCCCGGAACAAACGCACCACCAACCGCAACTTATGTCTCCTCCGCTTCCACTCCCCGCGCTTCGTCTTCAAGGCCTCCCTCCATTCCCACTCCCTCATCCTCGTCGTCGTCGTCGTCACTCTCTCCGCCGTCTCCTGGCTCCACTTCACTCTCAACAAGAAAAAAAACAAGTCTCTCAACCAGACACGGGGGCATGCGAATTTCGCGTTATCGCCTCAAGGAAGTAACGTTGGGAGCCAGGTCATTGATGGCGAGATTCTTGGTTTCACGGAATTTCAAAGGGATAACACGCTGACTGAGATTGGGAAGTTGAAGGATCACCACGGGGAAGAATACCGTGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTGCAAGAAGTGGCCCTCGCCACTGAGACTTCAGAGTCATCTTCTTCTGTTCTTGACTCTGGTGTGAATAATAATAATAGTAGTAGTAGTAGTAGTTCCACGGTATTGGATGAGTCTTTTTTATCTGTGGCTTTCTCATCAAGTTCATTACCACCTCTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAATTGACTCTGATCCCGAGTTGCCTTTAAATAACGTCGAAACTGAGCATACTGCTTCTTCTGTTCACGTAAACAACGCTCTGGCAGCTGTTGGTGAACATACTAAAGGAAAAATTGAACTTGGTGCCATCAACGGTGACGTCCTTTTTGGCGAGTCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGTTAACAAACCTGCAAGTGGATCTATGACACCGCTGAGTGGTTTAAAGTCATTATCTCCCCGTACTTCTTTTATGAATAAAAAAAGATCGCCCTCAGTGATGGGAAATGCCACACTAAAAGGAGCAGGATTATCTACGGATATCCCTCTACAAAATGCAGAACATGTCACAGGAGCAGCCGAAGTTTCCAGTCATAAAGATGGCTACCCTGTGGAACATGTAAGTAAAAACTTGAGGAGAGGCACAAGCTCTTCAAGAGACAGGGAAAGGAACAACATGGATTACAATAATAACGCAGTTTTACCCCACAATGCTCACTCAATGAAGATGCGTATTGATCTGAAAAATGATCAAATCATGGTGCATGATGGTCAGAAAAATGATCCTTTAGAGCATCTAAGCAAATATAATAATTTGCTAAAAGTTGGGAGGCTACATGAATGTGTAGAATTGCTTCAACATATGGAGACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACGTCTGCAAGAAACGAAAGGCTGTTAAAGAAGCTTTTGATTACATTAGGCTCATTCCAAATCCAACACTGAGTACATTTAACATGCTAATGTCGGTGTGCGCATGCTCCCAAGATTCAGAAAGGGCTTTCCAAGTTTTGCAGCTTCTTAAGAATGCTCAACTAGAACCTGATTGCAAACTCTATACCACTCTAATATTAACTTGTGCTAAGAGTGGCAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGAAGTGGAACCTAACGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAATAGCTAAAGCATTTGGTGCTTATGGAATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCTGTAGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAACACAGCCCATCGACCCAGATCATGTAACTATCGGTGCATTGTTGAAGGCATGCACTAAAGCTGGTCAGGTTGAACGAGCACAAGAAGTGTACAAGATGGTACAAAAATATAACATAAAGGGATGCCCAGAAGTTTACACCATTGCCATCAATTCTTGCAGCCAAACTGGGGATTGGGAATTTGCACTGGCTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATGTTTCTGAGTGCACTGATAGATGTTGCTGGTCATGCTAAAAACCTGGATGCTGCCTTTGATGTCCTACAAAAAGCCCGTGATGGAGGAATACGTATTGGAATAATGTCATATAGCTCATTGATGGGTGCTTGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAGGTCTCTTAAATTGACAATGACAGTTTCAACAATTAATGCTTTGCTCACCGCGCTTTGTGATGGAGATCAATTTCAAAAGGCTCTGGAGGTTTTATTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACATTCTCCATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCAGCTCAATTGCTCCTTTCTCAAGCAAAAAAAGATGACGTAGTCACTAATCTCATCATATGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAAGGCTTGCATTGTTGGTGAGCCTGTTTTATCTTTTCACTCAGGACGACCACACGTCAATAATAAATGGACATCGCTGGCCTTGACGGTGTTTCGTGAAACAATTGAAGCGGGTCAAAAGCCCACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTCCCATATGATACATCTCTGAAAAATAGACTTGTTGAGTACTCAGGAATAAGTGCAGAAACTTCAAGAGGGTCAAACCTCTGCTCATTAATGGAGGGATTTGGTGAATATGATCCTCGTGCTTTCTCAATACTTGAGGAATCTGCTTCATATGGAGTTGTTCCACCTGTATCATTTAAAATGAGTCCCATTGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTGTACTTCATAACAGTTTTGAAAGGTCTCAGACATAGACTAGCAGCAGGTGCAAGATTGCCCAACATAATCATTTTACTGCCCGTAGAGAAAACAGAAGTTGTGTCTCCGAAGGGGAAGAAGATTATTAACCTTGCAGGAAGAGCTGGCCAAGCAATTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCACCAGGGTAATGAATCGAATGGTAAGCTCAGAATTAATGGTCTGGCTCTGAAACAATGGTTTCAGCCGAAATTTGCATCTCCGTTTACCGGAAAACCAGGTGATTGGAGTTCCTCCTTATCGCGACTGGGCAAAAATATTAGTCATCAGCAACGAAACATCCGAATTGGCAATCTGTCTTTGGACTAA 3378 0.4337 MEVNLSLNRHRSLPLTSRSPSLSALRTRFLASTHSLRPPPTPPSLRSRNKRTTNRNLCLLRFHSPRFVFKASLHSHSLILVVVVVTLSAVSWLHFTLNKKKNKSLNQTRGHANFALSPQGSNVGSQVIDGEILGFTEFQRDNTLTEIGKLKDHHGEEYRVFEENEIHLPFLKSSVVQEVALATETSESSSSVLDSGVNNNNSSSSSSSTVLDESFLSVAFSSSSLPPLEFAEEMAIQVEESQDKIDSDPELPLNNVETEHTASSVHVNNALAAVGEHTKGKIELGAINGDVLFGESVREGLYMFYEVNKPASGSMTPLSGLKSLSPRTSFMNKKRSPSVMGNATLKGAGLSTDIPLQNAEHVTGAAEVSSHKDGYPVEHVSKNLRRGTSSSRDRERNNMDYNNNAVLPHNAHSMKMRIDLKNDQIMVHDGQKNDPLEHLSKYNNLLKVGRLHECVELLQHMETKGLLDMTKVYHAKFFNVCKKRKAVKEAFDYIRLIPNPTLSTFNMLMSVCACSQDSERAFQVLQLLKNAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSEVEPNVHTYGALIDGCARAGQIAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSCSQTGDWEFALAVYNDMTQKGILPDEMFLSALIDVAGHAKNLDAAFDVLQKARDGGIRIGIMSYSSLMGACSNARNWQKALELYEYLRSLKLTMTVSTINALLTALCDGDQFQKALEVLFEMKGLGLCPNSITFSILIVASEKKDDMEAAQLLLSQAKKDDVVTNLIICRCIIGMCLRRFEKACIVGEPVLSFHSGRPHVNNKWTSLALTVFRETIEAGQKPTSEILSQILGCLQLPYDTSLKNRLVEYSGISAETSRGSNLCSLMEGFGEYDPRAFSILEESASYGVVPPVSFKMSPIVIDAKELHASTAEVYFITVLKGLRHRLAAGARLPNIIILLPVEKTEVVSPKGKKIINLAGRAGQAIGALLRRLQIPHQGNESNGKLRINGLALKQWFQPKFASPFTGKPGDWSSSLSRLGKNISHQQRNIRIGNLSLD* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00836 1125 Gene3D Tetratricopeptide repeat domain 439 637 IPR011990 GO:0005515
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Lapu11g00836 1125 MobiDBLite consensus disorder prediction 384 406 - -
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Lapu11g00836 1125 Pfam Pentacotripeptide-repeat region of PRORP 504 637 IPR033443 -
Lapu11g00836 1125 Pfam Pentacotripeptide-repeat region of PRORP 651 810 IPR033443 -
Lapu11g00836 1125 Coils Coil 828 848 - -
Lapu11g00836 1125 Gene3D Tetratricopeptide repeat domain 638 724 IPR011990 GO:0005515
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Lapu11g00836 1125 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 11 1124 - -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 681 714 IPR002885 -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 539 572 IPR002885 -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 573 606 IPR002885 -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 504 537 IPR002885 -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 751 780 IPR002885 -
Lapu11g00836 1125 NCBIfam pentatricopeptide repeat 786 818 IPR002885 -
Lapu11g00836 1125 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 636 727 - -
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Lapu11g00836 1125 MobiDBLite consensus disorder prediction 187 206 - -
Lapu11g00836 1125 Gene3D Tetratricopeptide repeat domain 726 948 IPR011990 GO:0005515
Lapu11g00836 1125 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 450 581 - -
Lapu11g00836 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Lapu11g00836 1125 MobiDBLite consensus disorder prediction 384 399 - -
Lapu11g00836 1125 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 728 875 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00836 519 838 Glycosyltransferase AT1G05670 24.691 2.52e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00836 - - gmx:100814164 1779.22