Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00780 ATGCTTGTGTTGTTTGAAACGCCTGCGGGTTTTGCCCTGTTTAAAGTTCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTATGGAAGAACTTTTCCAGCGCAGACACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTCGAGAACACTTCAGAAGCTCTAGAAGCAGCTACTTTACTAATTGATGGTAAAGCAAGCAAGGGTTTGCGCAAGTTCTTGCGTGTTCATTGTGAAAATGAAACTCTAGGTGTGGCTGATTCAAAACTTGGGAATGTGATTAAAGAGAAATTGAAAATCGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGTGTTAGAAATCAGTTAACTGAACTCATTTCTGGTCTAGCTGTTCAAGACATGGCTCCAATGAGCTTGGGTTTATCCCATAGCTTGTCCAGATACAAGTTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTTGACGATCTTGATAAAGAGTTGAATACATATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTCCCAGAACTTACTAAAATAATACAAGATAACATCCAATATGCAAGGGCAGTCAAGTTGATGGGTGATCGTGTCAATGCAGCTGGGCTTGATTTCTCTGAGATTTTGTCTGAGGAAGTGGAGGCGGAGCTTAAGGAGGCAGCTGTAATATCTATGGGAACGGAGATTGGTGAGCTTGATTTGGCAAATATCAGGGAACTCTGTGACCAGGTTTTGTCTCTTTCGGAATACAGGGCACAACTCTATGATTATCTAAAGAGTAGGATGAACACCATTGCACCCAATTTGACTGCAATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGTAGCACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCATTGAAGACTAAGCATGCTACTCCCAAATATGGTCTTATATACCATGCATCCTTGATTGGTCAGGCAGCTGCCAAGTTCAAGGGGAAAATTTCTCGCTCACTTGCTGCAAAGACAGCATTGGCTATTAGGTGTGACGCACTTGGAGATGGCCAGGACAACACAATGGGATTGGAGAACAGAGCCAAGCTTGAAGCACGATTAAGGAACCTTGAAGGCAAAGAGTTGGGCCGTTTTGCTGGTTCTGCCAAGGGGAAGCCCAAGATAGAAGCATATGACAAGGACAGAAAGAAAGGAGCGGGAGGACTGATAACCCCGGCAAAGACATATAATCCCTCGGCTGATTCAGTTATCGGGCAAATTGCTGCCATGGATGAGGATATACAAGAGCCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAGGAAAAGAAGAAAAAGAAGGGGAAAAATGAAGAGGACCCATCTGTTCAAGCTGATGGAGATGTTGCTGAGGAGCCAGAACCCGAAGTTGTGAAGAAAGAAAAGAAGAAGAAAAGAAAGGAGAATAGTGAGAGTGCTGAATTGCAGAATGGGAATGACGACTTGAATGCAGGAGAGAAGAAGAAAAAGAGGAAAAAACACGCAGAGCAGGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGGAAAAAAAAGAAAACTGAGGAGTAA 1665 0.4336 MLVLFETPAGFALFKVLDEGKLSKVEDLWKNFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYARAVKLMGDRVNAAGLDFSEILSEEVEAELKEAAVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAAKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQIAAMDEDIQEPSVADKKKEKKEKKKKKGKNEEDPSVQADGDVAEEPEPEVVKKEKKKKRKENSESAELQNGNDDLNAGEKKKKRKKHAEQEESPEMPSKKKGKKKKTEE* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00780 554 MobiDBLite consensus disorder prediction 450 554 - -
Lapu11g00780 554 FunFam Nucleolar protein 58 284 405 - -
Lapu11g00780 554 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Lapu11g00780 554 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 551 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lapu11g00780 554 MobiDBLite consensus disorder prediction 412 426 - -
Lapu11g00780 554 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Lapu11g00780 554 FunFam Probable Nucleolar protein 58 129 283 - -
Lapu11g00780 554 MobiDBLite consensus disorder prediction 407 437 - -
Lapu11g00780 554 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Lapu11g00780 554 Gene3D Nop domain 285 397 IPR042239 -
Lapu11g00780 554 SMART NOSIC_2 159 211 IPR012976 -
Lapu11g00780 554 MobiDBLite consensus disorder prediction 519 554 - -
Lapu11g00780 554 MobiDBLite consensus disorder prediction 490 512 - -
Lapu11g00780 554 Gene3D - 129 284 - -
Lapu11g00780 554 SUPERFAMILY Nop domain 153 397 IPR036070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00780 Lapu-Chr11 10663096 10667782 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00780 K14565 - gmx:100775301 930.243