Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00774 ATGATGGCAAGTGATTCTTTTGTGATTCCCAATGGCAATGGCAAGTCAGAGGCTCCTCCACAGAGGACTTACCAAGCAGTAGTGATTGCAACCAGAGATATGGGCATTTCTAAGGATGGAAAATTGCCCTGGACATTACCCACTGATCTCAAATTTTTTGATGAGATCACTACTATAACGTCTGATCCGGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCACCTGAAAATAGGCCTCTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCTACTGCAGAGAATGTTGTCATATGTGGAAGTGTGTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGCGGTGGTGAGATATTCAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGTCCATGTTACAGAGATTGAGGCAAGCATTGAGTGTGACACTTTTATGCCTCGAGTTGATACCTCTCTTTTTCAGCCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTTCGCTATGCTTTCACCACTTATGTGCGTGTAAGGAGTTCTCCGGCAGAGTCCCTTGGTCAGAATGCTGATACATTTTTTGATAATAATTCGAACTCTTTAAAGTTTGAGGTCAATAAATTTTCTTTTCTTCCCAAATTCATTTATGAGAGGCATGAGGAGTTTAAGTATCTAAGGTTGGTTCGAGAAATTATTTCTGAGGGCACAATTAAGGATGACAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCACTTCTAACAACCAAGAAAGTATTCTGGCGAGGGGTTGTTGAGGAGCTTCTTTGGTTTATCAGCGGCTCGACAAGTGCCAAGGTGCTGCAGGAAAAAGACATTCATATCTGGGATGGCAATGCGTCTAGAGAATACCTTGATAGCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCGGTTTATGGGTTTCAGTGGAGGCATTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGTCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGTCGGATCATTCTTTCTGCTTGGAATCCATCCGATCTTAAATTGATGGCACTACCCCCCTGCCACATGTTTGCGCAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTACCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAATCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCGGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGAAAGATATAGATTCATTTGTGGCTGCCGATTTCAACCTCATAGGATATGACCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1584 0.4312 MMASDSFVIPNGNGKSEAPPQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFREALNAPGCEAVHVTEIEASIECDTFMPRVDTSLFQPWYSSFPLVEDNLRYAFTTYVRVRSSPAESLGQNADTFFDNNSNSLKFEVNKFSFLPKFIYERHEEFKYLRLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKDIHIWDGNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFNHVIGDAHVYRNHVRPLREQLQNQPKPFPILKINPKKKDIDSFVAADFNLIGYDPHQKIEMKMAV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00774 527 NCBIfam thymidylate synthase 246 527 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 MobiDBLite consensus disorder prediction 1 20 - -
Lapu11g00774 527 PANTHER THYMIDYLATE SYNTHASE 1 46 527 IPR045097 GO:0016741
Lapu11g00774 527 Pfam Dihydrofolate reductase 25 200 IPR001796 GO:0004146|GO:0046654
Lapu11g00774 527 PIRSF DHFR-TS 7 527 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lapu11g00774 527 Hamap Thymidylate synthase [thyA]. 244 527 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 ProSitePatterns Thymidylate synthase active site. 389 417 IPR020940 GO:0004799|GO:0006231
Lapu11g00774 527 SUPERFAMILY Dihydrofolate reductase-like 24 200 IPR024072 -
Lapu11g00774 527 FunFam Possible thymidylate synthase 238 527 - -
Lapu11g00774 527 Gene3D Dihydrofolate Reductase, subunit A 6 202 IPR024072 -
Lapu11g00774 527 PRINTS Thymidylate synthase family signature 378 397 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 PRINTS Thymidylate synthase family signature 460 477 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 PRINTS Thymidylate synthase family signature 285 306 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 PRINTS Thymidylate synthase family signature 422 448 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 PRINTS Thymidylate synthase family signature 404 419 IPR000398 GO:0004799|GO:0006231
Lapu11g00774 527 CDD DHFR 26 199 IPR001796 GO:0004146|GO:0046654
Lapu11g00774 527 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 236 527 IPR036926 -
Lapu11g00774 527 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 23 200 IPR001796 GO:0004146|GO:0046654
Lapu11g00774 527 Pfam Thymidylate synthase 246 527 IPR023451 -
Lapu11g00774 527 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 231 527 IPR036926 -
Lapu11g00774 527 CDD TS_Pyrimidine_HMase 247 480 IPR023451 -
Lapu11g00774 527 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 8 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00774 Lapu-Chr11 10603614 10606868 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00774 K13998 - gmx:100786311 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00774 11 10603614 10606868 Lapu11g00774 11 10603614 10606868 ECH