Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00748 ATGTCTGTTGCGGAGCTGAAGGAGCGTCACTCCGCTGCCATCGACACCGTCAACAATCTCAAGCACCGATTGAAGCAGAAGCGTCTTTCTTTGCTCGACACGGATGTCTGTGAATATGCAAGGTCTCAGGGTAGAACACCTGTGACCTTTGGACCTACGGATCTGGTTTGCTGTAGAACCTTGCAGGGTCACACAGGAAAGGTGTATTCGTTGGATTGGACTTCTGAAAAAAGTCAGATTGTTAGTGCATCTCAAGATGGACGATTAATAGTGTGGAATGCTCTAACTAGGCAGAAAATCCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACATGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGTGGTGGTCTTGACAGTGTTTGTTCTATTTTCCATCTTAATTCACCCACTGACAAAGATGGGAATCTACCTGTTTCCCGGATGCTTAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGATACTCATTTAATTACTGGTTCTGGTGATCAGACATGTGTTTTATGGGATATTACTACTGGTCTTAAAACATCTGTCTTTGGAGGAGAATTCCAGTCTGGACATACTGCAGATGTACTCAGTATCTCTATTAATGGATCCAACTCGAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCTCGGTTGTGGGATACTCGCGTGGCAAGTCGAGCTGTGCGGACATTTCATGGGCACGAGGGAGATGTTAATTCAGTTAAATTCTTTCCAGATGGAAATAGATTTGGAACAGGCTCAGATGATGGTACCTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATACTATCAGCAGCACAGTGACAATGACATACCGCCTGTGACTTCCATTGCATTCTCTGCTTCAGGAAGACTTCTTTTTGCTGGATACAATAATAGAGATTGCTATGTTTGGGACACCTTACTGGCAAAGGTGGTCTTGAATTTAGGATCTCTCCAAGACTCCCATGACGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCTTTGTGTACAGGCAGTTGGGACACAAACTTAAAGGTGAGCGTGAATTGCCTCCATCCCCATCCAAAAAGCAACATGTTGATAGATTCCTTAAGAGGTTTTAGAAATTTAATGACCACAACAGAGAGTTGGAACATCACATGA 1206 0.4378 MSVAELKERHSAAIDTVNNLKHRLKQKRLSLLDTDVCEYARSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFHLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNDIPPVTSIAFSASGRLLFAGYNNRDCYVWDTLLAKVVLNLGSLQDSHDDRISCLGLSADGSALCTGSWDTNLKVSVNCLHPHPKSNMLIDSLRGFRNLMTTTESWNIT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00748 401 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Lapu11g00748 401 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Lapu11g00748 401 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Lapu11g00748 401 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Lapu11g00748 401 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Lapu11g00748 401 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Lapu11g00748 401 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Lapu11g00748 401 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Lapu11g00748 401 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Lapu11g00748 401 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Lapu11g00748 401 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Lapu11g00748 401 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Lapu11g00748 401 Gene3D - 3 367 IPR015943 GO:0005515
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Lapu11g00748 401 PIRSF GNBP_B 1 370 - -
Lapu11g00748 401 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 367 IPR016346 GO:0007165
Lapu11g00748 401 CDD WD40 57 367 - -
Lapu11g00748 401 SMART WD40_4 329 369 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 96 135 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 145 185 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 279 323 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 237 276 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 192 233 IPR001680 GO:0005515
Lapu11g00748 401 SMART WD40_4 54 93 IPR001680 GO:0005515
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Lapu11g00748 401 Coils Coil 3 23 - -
Lapu11g00748 401 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Lapu11g00748 401 FunFam Guanine nucleotide-binding protein subunit beta 2 369 - -
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Lapu11g00748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Lapu11g00748 401 SUPERFAMILY WD40 repeat-like 54 367 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00748 Lapu-Chr11 10436359 10440571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00748 172 366 Miscellaneous Gene Families AT5G08390 28.718 3.00e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00748 K04536 - gmx:100794776 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00748 11 10436359 10440571 Lapu11g00748 11 10436359 10440571 ECH