Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00709 ATGACAAATGCTCATGGTGGCTCCATGTTGGTGGAGCTAGATACACACAACACCTTGCACAGACCCAAATTTGAAACCTTCTCGCATTCTGAACCCACCTCGTTTAACGATTCACATAATGAGGACGATGACTTCAACTTTAACCGCTCGAGCAATTACGCCGATAGCAGCACCACAAGCAGCACCACAAGCAGCAATAATGCCTCTCCCTACTCCATGTCCCCATGGAACTACCAACCCAATACTTTTTCTCCTGTCAACAAGTCTCCATGGTTATTACCCACCTCTCCTGCAAACCTCATCAACCCTCACAACGAAGATGATCTCCCCGAAACTAAGCTCATTGGATCCCTCGTTCGTGAAACAGGTCACATATATTCTTTGGCTGTTTCTGGGGACTTGTTATACACTGGCTCCGACAGCAAGAACATAAGAGTTTGGAAGCATCTCAAGGACTTCACTGGTTTCAAATCAAGCAGTGGATTGGTCAAAACCATAGTAATCTCTGGTGGAAAAATTTTCACTGGCCACCAAGATGGGAAAATCAGAGTATGGAAAGTTTCGTCCAAGAATCCAAAAAACCACAAACGCATAGGGAGCTTGCCCACGTTCAAAGAATACGTGAAAAGTTCCATGAACCCAAAGAACTACGTCGAGGTTCGGCGGAATAAAAACGCCGTTAAGGTGAAACACTTTGACGCCATTTCGAGTTTAAGCCTAGACAAGGAAGAAGGGTTGTTGTACTCTGGGTCGTGGGACAGGACGCTCAAGGTGTGGCGCGTGGCAGATTCAAAGTGCTTGGAATCTGTTAACGCGCATGATGATGCAGTGAATGCGGTGGTGGTGGTGTTTAGTGGATGCGTGTTGACGGGGTCCGCCGATGGGACAGTGAAGGTATGGAAGAGGGTGAACAGGCTCAAAGGGGAGAAGGTGAAGAAGCCAAAACTTGCGTTGGATCAAATTTTGCTAAAGCAAGAGAACGCTGTTACAGCATTGGCGGTGAACCGTATGGCCACGGTGGTTTACTGTGGTTCTTCGGACGGGTTAGTGAACTTTTGGGAGCGTAACCAAAAGGGTGAGTACTCGCAAGGCGATGTTTTAAGGGGGCACAAGCTCGCCGTGCTTTGCCTCGCCGTAGCGGGGAACCTCATCTTCAGTGGCTCAGCAGATAAGAATGTGTGTGTGTGGAGGCACAATGAGAATGGATTCCACACATGCCATTCGGTTTTGGTAGGTCACATGGGTCCTGTTAAGTGTATTGCCGTGGAGAAGGAACACCTGCAATCGGAGAAGTGTCACGAGAGGGATCAAGGGTGGATTGCGTACACTGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGTGTGTTTGAACGAGCACAGGAGGTGAACACGTTCCAAAGTGATGTCTCCAAGAGCACTCCTACTTGTAACAAT 1434 0.4847 MTNAHGGSMLVELDTHNTLHRPKFETFSHSEPTSFNDSHNEDDDFNFNRSSNYADSSTTSSTTSSNNASPYSMSPWNYQPNTFSPVNKSPWLLPTSPANLINPHNEDDLPETKLIGSLVRETGHIYSLAVSGDLLYTGSDSKNIRVWKHLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPKNHKRIGSLPTFKEYVKSSMNPKNYVEVRRNKNAVKVKHFDAISSLSLDKEEGLLYSGSWDRTLKVWRVADSKCLESVNAHDDAVNAVVVVFSGCVLTGSADGTVKVWKRVNRLKGEKVKKPKLALDQILLKQENAVTALAVNRMATVVYCGSSDGLVNFWERNQKGEYSQGDVLRGHKLAVLCLAVAGNLIFSGSADKNVCVWRHNENGFHTCHSVLVGHMGPVKCIAVEKEHLQSEKCHERDQGWIAYTGSLDKSVKVWRVFERAQEVNTFQSDVSKSTPTCNN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00709 478 MobiDBLite consensus disorder prediction 49 70 - -
Lapu11g00709 478 Pfam Nucleoporin Nup120/160 118 270 - -
Lapu11g00709 478 Gene3D - 223 318 IPR015943 GO:0005515
Lapu11g00709 478 MobiDBLite consensus disorder prediction 26 70 - -
Lapu11g00709 478 Gene3D - 319 477 IPR015943 GO:0005515
Lapu11g00709 478 Gene3D - 108 222 IPR015943 GO:0005515
Lapu11g00709 478 SUPERFAMILY WD40 repeat-like 110 459 IPR036322 GO:0005515
Lapu11g00709 478 FunFam BnaA09g28200D protein 218 305 - -
Lapu11g00709 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 301 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 315 354 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 403 454 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 111 148 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 360 397 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 149 186 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 222 260 IPR001680 GO:0005515
Lapu11g00709 478 SMART WD40_4 263 301 IPR001680 GO:0005515
Lapu11g00709 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 261 - -
Lapu11g00709 478 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Lapu11g00709 478 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Lapu11g00709 478 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Lapu11g00709 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 396 IPR001680 GO:0005515
Lapu11g00709 478 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 52 459 IPR045182 -
Lapu11g00709 478 Pfam WD domain, G-beta repeat 406 453 IPR001680 GO:0005515
Lapu11g00709 478 Pfam WD domain, G-beta repeat 366 396 IPR001680 GO:0005515
Lapu11g00709 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00709 Lapu-Chr11 10150009 10151444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00709 173 397 Acyl Lipid Metabolism Gene Families AT3G18860 27.200 2.20e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00709 - - vun:114170412 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00709 11 10150009 10151444 Lapu11g00709 11 10150009 10151444 ECH