Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00664 ATGTCTGAGAAAACTCGAACCTTTTGCAAAGCCACTCCCTCCACTGCCTCCAATCCCAACACACCCTCTTCCTTTGTTGAAGCTTCCCAGTCCAAAGTTCGCGTCTTTGTTAGGAGAAATAAAAAACCCAGAAAAATGGCTGTAAAACTTGAAGAAGAGGACCATCTTCCGTCAACCCAGGATCACAAGGTCTCAACTTTTCCATCATTGCTTTTGTTTCTGCATAAATGGATCACTGGGTGTCTAAGTTCTGAATCCTTGGCTTTTCGTGTTGTTATAATAAGGTTTTTGACTTGCAATGAGTTGTATGATCAGGTTCCGGTTACTCAGAAGTTTGGCCTTCCAGCAATTGAAGAATTTGCATACTGTGGAGCAAATGAAATGACTCGGCGTGGGAAATCTGAAATGAAATCACATGTGGCTTCAGTGGTGAGGGAAGTCGCTTCAAACAGACCTGGTGGTGAATCACCTGCCCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCCGTGGATACTATGGGATGTGAGAAAGCTGGTGACACACTACCTCCTAAGGAGAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCTAGCCAAACAAAGGATCCTGTTACTCATGGAGCAATTCAACGCCTTCTTCAAAATGATCTGCTCACCGCTGAAGCAATCAATAATGTTGATGAAGACACCGTCAAAAAGTTGATTTACCCTGTTGGGTTCTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGCCTTATGAAGTACGACGGAGACATACCTAGCTCACTTGACCAACTACTGTTACTTCCAGGCATTGGTCCTAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTTCATCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAGACAGAAAACTTCAACACCAGAAGAGACAAGAGAGTCACTGCAACGTTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTTTATTGGTTGGATTTGGACAAACAGTTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGTGTAAGTGAGTTATGTCCCTCAGCCTTCAAAGAGACCTCAAACTCAAATCCATCTTCCAAGTCTAAAAGCAAGAAGCCTTAA 1203 0.4331 MSEKTRTFCKATPSTASNPNTPSSFVEASQSKVRVFVRRNKKPRKMAVKLEEEDHLPSTQDHKVSTFPSLLLFLHKWITGCLSSESLAFRVVIIRFLTCNELYDQVPVTQKFGLPAIEEFAYCGANEMTRRGKSEMKSHVASVVREVASNRPGGESPAHWEKVLEGIRKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTAEAINNVDEDTVKKLIYPVGFYTRKATNLKKIANICLMKYDGDIPSSLDQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTRQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTVCTPLRPRCGECSVSELCPSAFKETSNSNPSSKSKSKKP* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00664 400 Pfam Helix-hairpin-helix motif 267 295 IPR000445 GO:0003677
Lapu11g00664 400 Hamap Endonuclease III-like protein 1 [NTHL1]. 156 385 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Lapu11g00664 400 SUPERFAMILY DNA-glycosylase 168 392 IPR011257 GO:0003824|GO:0006281
Lapu11g00664 400 ProSitePatterns Endonuclease III family signature. 270 299 IPR004036 -
Lapu11g00664 400 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 52 397 - -
Lapu11g00664 400 Pfam HhH-GPD superfamily base excision DNA repair protein 201 344 IPR003265 GO:0006284
Lapu11g00664 400 SMART endo3end 205 361 IPR003265 GO:0006284
Lapu11g00664 400 MobiDBLite consensus disorder prediction 1 24 - -
Lapu11g00664 400 FunFam Endonuclease III homolog 295 385 - -
Lapu11g00664 400 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 363 379 IPR004035 -
Lapu11g00664 400 Gene3D - 295 385 IPR023170 -
Lapu11g00664 400 Gene3D Hypothetical protein; domain 2 183 294 - -
Lapu11g00664 400 FunFam Endonuclease III-like protein 1 192 296 - -
Lapu11g00664 400 CDD ENDO3c 197 359 IPR003265 GO:0006284
Lapu11g00664 400 SMART ccc3 362 382 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00664 Lapu-Chr11 9780476 9785681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00664 K10773 - gmx:100818398 565.074