Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00623 ATGTTGAGGGTGGCCTTGCGATGGAATTGGAGGCCAATGGCTTCTCTGCCTCTGACTGCCCTCACATCCCAACATTTCTACAAGCTGAACCCTAGGCCTCCAGGTCGCACCTTCAGGCTTTTTTGTCGACCGTCTTCTTCCGCCGTTGCGCACACCTCGCTTCCTCTCTCCGCCGACTTGCACCACTACCTCCGCTGCTCCATGCCGCAGAATTCGCCGCTCCGAGTCGCGGTTCTCGTTAGTGGAGGCGTCGATAGCAGCGTCGCTCTCCGCCTGCTTCACGCCGCCGGTCATTCCTGCACCGCTTTCTACCTTAAGATATGGTTCCAAGAAGATTTCGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTTTGTGACCAGGTTGATGTACCGTTAGAAGTTGTTCATTTAACTGATGAATACTGGAACAATGTGGTTTCTTACCTCATTGAAGAGTATAGTAGTGGCCGAACTCCTAACCCCGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGCTTTGACTACGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGGTGGCTTGGATGAGCCTTCTGTTCTAGAACTATCACAAGACATGGTAAAGGATCAAACATATTTCCTTTCACACCTCTCACAATCCCAGCTGAAGCAACTTCTTTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCTACAAAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGTAAGATAAGATTTAGTGAATTTGTTGCAAGACATATTGGGGAAAGAGAAGGTATCATATTGGAGGCTGAGACAGGGGATTTCCTGGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGACAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCGAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGGTGCTCCCAGGCCAGACAAGTCAGCTCCAGTGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGATGGAGATGGCCAAGGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTTGCGGCCTTTTATGAGGGTAGAACATGCATAGGTTCTGGTGTGATTTTGGAGTTCTGGGATCATCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATGCTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAACCCGCAACAGGTGTGTGATTCTGCAGAGTTATCTATAAATAAATATCTGTTTAGTATTCAAACATGA 1488 0.4543 MLRVALRWNWRPMASLPLTALTSQHFYKLNPRPPGRTFRLFCRPSSSAVAHTSLPLSADLHHYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCDQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCAGGLDEPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSEVLPGQTSQLQCKVRHGPGFYDCSLQMEVDGDGQGHSAVVRISEDDQGLAAGQFAAFYEGRTCIGSGVILEFWDHQSFPVCTKALEIARMEDKSMLGNPVKIKVKPDNPQQVCDSAELSINKYLFSIQT* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00623 495 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Lapu11g00623 495 Gene3D Translation factors 354 444 - -
Lapu11g00623 495 Gene3D HUPs 59 287 IPR014729 -
Lapu11g00623 495 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Lapu11g00623 495 FunFam tRNA-specific 2-thiouridylase MnmA 288 347 - -
Lapu11g00623 495 Pfam tRNA methyl transferase HUP domain 75 278 - -
Lapu11g00623 495 CDD tRNA_Me_trans 75 435 IPR004506 GO:0008033|GO:0016740
Lapu11g00623 495 Gene3D - 288 347 IPR023382 GO:0016783
Lapu11g00623 495 Pfam Aminomethyltransferase beta-barrel domain 355 435 IPR046885 -
Lapu11g00623 495 NCBIfam tRNA 2-thiouridine(34) synthase MnmA 75 435 IPR004506 GO:0008033|GO:0016740
Lapu11g00623 495 PANTHER - 60 478 - -
Lapu11g00623 495 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 74 436 IPR004506 GO:0008033|GO:0016740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00623 K21027 - gmx:100785275 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00623 11 9390091 9402250 Lapu11g00623 11 9390091 9402250 ECH