Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00612 ATGCGGCAATGGAAACAGCTGGGAGAGGTCTTGGTGGCGGCTTCTATCACCAACACGCTATCCCACTCTCACGCTGCAACGCTCAATCTCCCACGCGCCGTCGCTCTCGGACTTACCCAACCCCTTATTCTGAGAATCCTTTCAAACCAGTCCATTCATCCTTCGCAAAAGCTTCGTTTCTTCCAATGGTGCCGCTCCCACCACAACCCTTCTTCGGCCGCTTACTCCCTCGTCCTCCGCTCCCTCTCCGGCGGCGGCTTCTTCTCCGACATCCCCTCGCTATTCCATTCCATGATGCAAGACGGCGTTGTTCTCGATCCCCACTCCCTCAACCTCCTCCTCCACTCCTTCATTCTCTCCTCGAACTTCCATTTGGCTTTCCAATTACTAGATTACGTGCAGCACCTTCACCTTGATGCCACCACAATCTACAACTCCCTCATCGCTGCTTTACTCGCGAAAAACCAGCTCTCTCTCGCGTTATCCATCTTCTTCAAGCTCCTCGACGCGGTGGATTCGAAATCCATCGCGTGCAACCAATTGTTGGTTGCTCTGAGGAAAGCAGATATGAGGGTGGAGTTTAAGCAAGTGTTTACAAAATTGAGGGAGAAGAAAAGGTTTTCGTTTGATACATGGGGTTACAATGTGTGTATTCACGCGTTTGGTTGTTGGGGTGATTTGGCTACTTGCTTCGCGCTCTTCAAGGAGATGAAGGACGATGGTAAGGGGTCGGTTGCCCCTGATTTGTGCACCTACAACAGTCTCATCACTGCGCTTTGCAGGCTTGGCAAGGTGGACGATGCGCTTGTTGTGTGGGAGGAGCTCAATGGCTCAGCTCACCAACCTGATCGCTTCACCTATACAAACCTAATTCATGCCTGTTGTGGAACTTTTAGGATGGGTGATGCCACAAGGGTTTTTAATCACATGCAGAGCAATGGGTTCCGCCCGGATACGCTTGTTTATAATTCTCTTCTGGATGGACATTTCAAGGCCACCAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGATTCAAGAAGGGGTGAGGCCTTCTTGCTGGACTTACAATATTCTCATTCATGGGTTGTTTAGGAATGGCAGGGCGGAAGCTGCTTATACTATGTTTTGTGACCTCAAGAAGAAGGGCCAATTTGTGGATGGGATTACTTACAGCATTGTTGTGTTGCAGCTTTGTAAGGAGGGTCAACTGGAGGAGGCGCTCCAGTTGGTGGAAGAAATGGAAAACAGAGGTTTTGTTGTTGACCTTGTCACCATAACATCGCTGCTAATTAGCTTTCATAGGCACGGTCGCTGGGATTGGACGGACCGGCTTATGAAGCATATCAGGGAAAGTAATTTGGTACTTTCCGTTCTTAAGTGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCTCCTGGCAAGAAAAAGGATTACTCTCCTATGTTCCCTTCCAAAGGAGATTTTAGTGACATCATGAGCTTCATGAGCTGTGCCCAGGATACCACCAACATTAATGATGGGGAGGAAACTTCCTGCGATGGGATTGACGAGTGGTCATCGTCGCCGCACATGGATAAATTGGCCAATCAAGTGTGTTCCACTGGCTATTCTTCCCAGCTGTTTACTCCTTCTCGTGGTCAAAGAGTCCAAGAAAAAGGATCCGATTCTTTTGATGTTGATATGGTGAATACTTTTTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAGTTGTTTGAGATTTTCAGTGATGCAGGTGTGAGTCCTGTGAGTTATTCTCATAATTCTATCATGAGTTCTTTCGTCAAAAAGGGCTACTTCACTGAGGCTTGGGCTGTTCTGACTGGAATGGGAGAAAAATTTTGTCCTGCTGATATAGCCACATACAATATGATAATTCAAGGTTTAGGAAAGATGGGACGAGCTGATCTAGCTAGTGCTGTTCTTGATAGGCTACTGAAGCAGGGAGGTTATCTTGACATAGTTATGTATAACACGCTCATCAATGCTCTGGGGAAGGCAGGCCGAATCAATGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGCAGTGGGATAAATCCTGATGTTGTCACTTATAATACGTTGATTGAAGTTCACAGTAAGGCAGGGCTATTAAAGGATGCTTATAACTCCTTCCTCTTCTCAAGCCTCATCGCCTTGGCTCTCAAAAACGTGATCAACTTCAGCAAGGACGTCGACGATGGAGACGTTTTGGCCGCCAACACCAACAACAGCTGGGTCCACAGTGTTGCAAAAATTAACACGGTGGTTTTGAGGTTAGGGACTCTGGTTTCGGCTTTTGGGTCGGTTTTCGGATGCGGGTTTTTGGTGATGGCTCTTGTGGATTTGGTGCAGATCAAGTTGGGAACCATTGCTTGTGGGAGTCCTCATACTTTCGCTGCGGTGGCTCCCTTGCTCGTTCTTGTTCCATCTGCGCTTCTTATATATGTTTTTCTCGTCCTCTATGCCTTTACTCGTTAA 2517 0.4728 MRQWKQLGEVLVAASITNTLSHSHAATLNLPRAVALGLTQPLILRILSNQSIHPSQKLRFFQWCRSHHNPSSAAYSLVLRSLSGGGFFSDIPSLFHSMMQDGVVLDPHSLNLLLHSFILSSNFHLAFQLLDYVQHLHLDATTIYNSLIAALLAKNQLSLALSIFFKLLDAVDSKSIACNQLLVALRKADMRVEFKQVFTKLREKKRFSFDTWGYNVCIHAFGCWGDLATCFALFKEMKDDGKGSVAPDLCTYNSLITALCRLGKVDDALVVWEELNGSAHQPDRFTYTNLIHACCGTFRMGDATRVFNHMQSNGFRPDTLVYNSLLDGHFKATKVVEACQLFEKMIQEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMENRGFVVDLVTITSLLISFHRHGRWDWTDRLMKHIRESNLVLSVLKWKAGMEASMKNPPGKKKDYSPMFPSKGDFSDIMSFMSCAQDTTNINDGEETSCDGIDEWSSSPHMDKLANQVCSTGYSSQLFTPSRGQRVQEKGSDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVSPVSYSHNSIMSSFVKKGYFTEAWAVLTGMGEKFCPADIATYNMIIQGLGKMGRADLASAVLDRLLKQGGYLDIVMYNTLINALGKAGRINEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGLLKDAYNSFLFSSLIALALKNVINFSKDVDDGDVLAANTNNSWVHSVAKINTVVLRLGTLVSAFGSVFGCGFLVMALVDLVQIKLGTIACGSPHTFAAVAPLLVLVPSALLIYVFLVLYAFTR* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00612 838 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 143 469 - -
Lapu11g00612 838 Gene3D Tetratricopeptide repeat domain 299 481 IPR011990 GO:0005515
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Lapu11g00612 838 Gene3D Tetratricopeptide repeat domain 662 726 IPR011990 GO:0005515
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat 384 416 IPR002885 -
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Lapu11g00612 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat family 317 365 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat family 665 709 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat family 247 295 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat 633 661 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat 214 241 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat 598 624 IPR002885 -
Lapu11g00612 838 Pfam PPR repeat 143 168 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 250 275 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 356 384 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 597 630 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 667 701 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 285 319 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 214 241 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Lapu11g00612 838 NCBIfam pentatricopeptide repeat 321 354 IPR002885 -
Lapu11g00612 838 Gene3D Tetratricopeptide repeat domain 544 661 IPR011990 GO:0005515
Lapu11g00612 838 Gene3D Tetratricopeptide repeat domain 37 161 IPR011990 GO:0005515
Lapu11g00612 838 Gene3D Tetratricopeptide repeat domain 169 298 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00612 Lapu-Chr11 9309524 9315681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00612 531 730 Miscellaneous Gene Families AT4G11690 24.000 1.15e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00612 - - gmx:100788992 1278.85