Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00598 ATGGCATCAACTACTCTCTTCAACTTCGGACTCTCTCTGATCAACCCACTGCATCATCAAAGGAAAAAGAGGCCAAAATCTCTACTCTCATCTTCTCGCACCAATCCACGCCTTGTTTCTTCAATTAACAGTCATTTGGCGCTCACACGTGTCACATATCCGCTTCTCCGGTCTTATTCTGCTCCCAAGCGCAGATTCCACGTTGAAGTGCAGAAAGAGTATTCTGGTGGGGAAAGCTCAGAGTCGCTTGTTTCTGACGCAACATACCAAGAGGAATTTTCTTGGTCTTCAGTAGTTCTTCCGTTTCTGTTCCCTGCATTGGGTGGCTTATTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATCTCACTGCAGTCACCTGATCTCAGCGGAATAACATGGTTCAATCTTTCTGCCATTCAGCTTGGACTAGTGGTTAGTGGTTCCCTATACGGGGCTCTTCTTGGCTCACTTCTTGCGTATGCCATAGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGTTGCAGCACTGTTGTATATATTTGGTGGTGTGGTTACTGCCAATGCACCAGAACTTGGTGTTCTCTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGTTTGGCCATGCATGGGGCTCCTTTGTATATTGCAGAGACTTGTCCATCACAAATCCGTGGTACCCTAGTATCACTAAAAGAACTCTTCATTGTCCTGGGGATTCTGTTGGGTTATTTTGTGGGAAGCTTTTTGATTGATACAGTTGGAGGATGGCGGGTCATGTATGGATTTAGTGCTCCAGTTGCTGTATTGATGGGTCTTGGAATGTGGACTCTCCCCCCTTCTCCTCGTTGGTTGCTTCTCAGAGCAGTGCAAGGAAAAGGTTCTTTTCAAGATTTGAAGGAAAAGGCCATCGTTTCCCTGAGCAAATTAAGGGGTCGACCGCCTGGTGACAGAGAATCTGTGAGGCAAATAGAAGATACCCTTCTCTCGTTGAAGTCTGCCTATGAAAATCAGGAATCAGAGGGGAATTTCTTAGAGGTGTTCCAGGGTCCCAATCTGAAAGCTTTTATAATTGGTGGAGGATTAGTCTTATTTCAACAGATAACAGGTCAACCAAGTGTTCTGTATTATGCAGGCCCAATTCTTCAGAGTGCTGGATTTTCTGCTGCATCTGATGCTACAAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACTTGGATTGCTGTCCTAAAAGTTGATGATTTGGGGAGAAGGCCTCTGCTCATTGGAGGTGTCAGTGGCATTGCCCTCTCTTTAGTTCTCCTTTCTGCCTATTATAAATTTCTTGGAGGGTTCCCACTTGTTGCTGTTGGAGCTTTACTTCTTTATGTTGGTTGCTACCAGATATCATTTGGGCCGATAAGTTGGTTAATGGTATCAGAGATCTTCCCACTTCGCACTAGAGGAAAGGGGATTAGTCTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTAGTCACGTTTGCATTCTCTCCATTAAAGGAGCTTCTAGGAGCAGAAAATCTTTTTCTCCTTTTTGGGGCTATAGCTATTCTATCACTTCTGTTCGTGATCTTTTCTGTCCCAGAGACAAAAGGCTTAAGTTTAGAAGACATAGAATCCAAAATCTTGAAATGA 1677 0.4407 MASTTLFNFGLSLINPLHHQRKKRPKSLLSSSRTNPRLVSSINSHLALTRVTYPLLRSYSAPKRRFHVEVQKEYSGGESSESLVSDATYQEEFSWSSVVLPFLFPALGGLLFGYDIGATSGATISLQSPDLSGITWFNLSAIQLGLVVSGSLYGALLGSLLAYAIADFLGRKRQLIVAALLYIFGGVVTANAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLGILLGYFVGSFLIDTVGGWRVMYGFSAPVAVLMGLGMWTLPPSPRWLLLRAVQGKGSFQDLKEKAIVSLSKLRGRPPGDRESVRQIEDTLLSLKSAYENQESEGNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAIAILSLLFVIFSVPETKGLSLEDIESKILK* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00598 558 ProSiteProfiles Major facilitator superfamily (MFS) profile. 101 545 IPR020846 GO:0022857
Lapu11g00598 558 ProSitePatterns Sugar transport proteins signature 2. 204 229 IPR005829 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 FunFam D-xylose-proton symporter-like 3, chloroplastic 94 556 - -
Lapu11g00598 558 SUPERFAMILY MFS general substrate transporter 102 553 IPR036259 -
Lapu11g00598 558 Pfam Sugar (and other) transporter 104 553 IPR005828 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 NCBIfam sugar porter family MFS transporter 95 552 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 CDD MFS_GLUT10_12_Class3_like 104 552 - -
Lapu11g00598 558 Coils Coil 325 345 - -
Lapu11g00598 558 Gene3D MFS general substrate transporter like domains 92 556 IPR036259 -
Lapu11g00598 558 PRINTS Sugar transporter signature 480 492 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 PRINTS Sugar transporter signature 199 218 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 PRINTS Sugar transporter signature 370 380 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 PRINTS Sugar transporter signature 457 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 PRINTS Sugar transporter signature 109 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu11g00598 558 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 95 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00598 Lapu-Chr11 9250848 9255308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00598 18 558 Organic Solute Cotransporters AT5G59250 73.857 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00598 - - gmx:100809316 957.592