Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00571 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTAGCAGCTTTGTTACACACACACCCTTCTCTCATGAACCACACCACTGTCTATGATCATCACTCCCCTCTCCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTGGATGGATCTGTGAATCCGGATGCGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATGTATTAATGTTTGATGCGTGTTATGGAAGGACCTGCTTGCACTATGCAGCTTATTATGGGCATTCTTCTTGCCTTAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCTGTGGCTGCTTCTTGGGGTTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCATTGCACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCTAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGTATACCTTATGTGGTTGCTCTTAAACATAGACACAACGCATGTGCGGCATTGCTGAATCTTTCGTCTGCTGAGCCTCTTGTATGGCCATCTTCTTTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAACAATTATTAGAGCAGGCCCTGATGCACGCAAACAGGGAAAGGGAGCAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGACAGAGGACAACATTTCTGAGGTTAGTGAGACGGAATTATGTTGCATCTGCTTTGAGCAAGTTTGCACAATTGAGGTGCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTATTGTCCCACCAGTTTGTCCATTCTGCAGAAGCAGCATAGCAAGATTGGTGGTTGTGAAAACTGAAAGCCCTCGTGACATTGATCAAGATGGTGTTGACATTACTTGTTCCAAGCCTAGCAAGTCAAGGAAAACCCGAAACATGAACGAGGGTGGTGGCAGCAGCAGCATCAAGGGATTATCAAGTGTGAACTCATTTGGAAAGATGGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1347 0.4803 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPDAKQLLEQALMHANREREQNILKGSDYSLPSPAHSDGTEDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRIVPPVCPFCRSSIARLVVVKTESPRDIDQDGVDITCSKPSKSRKTRNMNEGGGSSSIKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00571 448 Gene3D - 198 251 IPR036770 -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lapu11g00571 448 SMART ANK_2a 112 142 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 194 223 IPR002110 GO:0005515
Lapu11g00571 448 SMART ANK_2a 227 256 IPR002110 GO:0005515
Lapu11g00571 448 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Lapu11g00571 448 SUPERFAMILY RING/U-box 314 374 - -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Lapu11g00571 448 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lapu11g00571 448 Gene3D - 144 197 IPR036770 -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Lapu11g00571 448 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Lapu11g00571 448 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lapu11g00571 448 MobiDBLite consensus disorder prediction 397 448 - -
Lapu11g00571 448 Gene3D - 9 143 IPR036770 -
Lapu11g00571 448 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Lapu11g00571 448 CDD RING-HC_XBAT31-like 312 376 - -
Lapu11g00571 448 MobiDBLite consensus disorder prediction 405 428 - -
Lapu11g00571 448 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Lapu11g00571 448 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 138 - -
Lapu11g00571 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 386 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00571 Lapu-Chr11 9029013 9032351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00571 12 330 Miscellaneous Gene Families AT5G60070 27.893 7.40e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00571 - - gmx:100800611 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00383 5 3169480 3173373 Lapu11g00571 11 9029013 9032351 PCT