Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00553 ATGGCACCAAAGGCGGAAAAGAAGCCAGCGGAGAAGAAACCTGTGGAGGAGAAGAAGTCCACCGTAGGAGACAAGGCTCCGGCGGAGAAGAAGCCAAAGGCGGGAAAGAAGCTTCCGAAGGAGGGAGGAGCTGGTAGTGACAAGAAGAAGAAGAGAAGCAAGAAGAATGTGGAGACATACAAGATCTACATCTTTAAGGTTCTGAAACAGGTTCACCCTGACATTGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAATGACATTTTTGAGAAGCTTGCCCAGGAATCTTCTAGACTTGCCCGCTACAATAAGAAACCCACCATCACCTCAAGGGAGATTCAGACTGCTGTCAGACTTGTGCTGCCCGGAGAATTGGCCAAACATGCTGTCTCTGAGGGTACCAAGGCTGTTACAAAGTTCACTAGTTCTTGA 444 0.4865 MAPKAEKKPAEKKPVEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGSDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00553 147 ProSitePatterns Histone H2B signature. 115 137 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 Gene3D Histone, subunit A 23 147 IPR009072 GO:0046982
Lapu11g00553 147 Pfam Core histone H2A/H2B/H3/H4 4 123 IPR007125 GO:0003677
Lapu11g00553 147 PRINTS Histone H2B signature 60 78 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 PRINTS Histone H2B signature 131 144 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 PRINTS Histone H2B signature 118 131 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 PRINTS Histone H2B signature 101 118 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 PRINTS Histone H2B signature 79 99 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 FunFam Histone H2B 1 147 - -
Lapu11g00553 147 SUPERFAMILY Histone-fold 39 147 IPR009072 GO:0046982
Lapu11g00553 147 SMART h2b3 50 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lapu11g00553 147 MobiDBLite consensus disorder prediction 1 55 - -
Lapu11g00553 147 PANTHER HISTONE H2B 21 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00553 Lapu-Chr11 8885264 8886386 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00553 K11252 - vum:124842194 228.024