Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00537 ATGATCTGTGTGAGAAGCAAAACGATTAATCCAAATGCATTGCTCCATTATGCTAATAATGGATCCCTATTCCACACGCATAAACCTCAACACCATGAAAGACAAACTCCAAAATTTCGCAGGAGGCGCATTCCCTTCGTCACCGAAGTCAAAACAGTGGAAGACCCAGAAGAAGCCTTGTCTCTCTTTTACCGTTACAAGGAACAGGGTTTTCGCCACTATTACCCTTCCTACGCCGCATTGCTCTACAAACTAGCTCGTTCTAGAATGTTCGAAGCCGTCGAAACCATTCTCGCTCACATGAAAGACACCGATATGCAATGCAGAGAAAGCGTCTTCATTGCTCTCTTTCAATATTACGGTCCCCAAAAGGCCGTTGAACTCTTCAACAGAATGCCCCAGTTCAACTGTGTCCGCACGATACAGTCCTTCAACGCTCTTCTCAATGTTCTAGTAGACAATGATAGATTCGATGAGGCCAGTGATCTTTTTTGTCGATCCTCTGAAATGGGATTTCGTCCAAACACTGTCAGTTTCAATATAATGACCAAGGGGTGGTTGGGAAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGCAACCGAGTGTGGTCACTTACAATAGTCTCATTGGGTTTTTGTGTAGGAAAGGTGATTTGGATAAAGCAATGGCCTTGCTTGAGGACATGGGTCTGAAAGGTAGACGCGCAAATGAAGTAACTTATGCTCTGTTGATGGAGGGTTTGTGTTCTGTGGAGAAGTATGATGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGTGGGTGTAAACCCCAGCCAGTGAATTTTGGTGTACTGATGAATGATCTTGGGAAGAGAGGAAAGGTTGAAGAGGTCAAGTCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTTCAACATATTGATAAATTATCTTTGCAAGGAAGGTAAGGCAGTTGAAGCCTACAAAGTTTTATTTGAGATGCAGATTGGGGGATGTAAGCCTAATGCTGCTACATACAGGATGGTGGTTGATGGTTTGTGTCGGATAGGGGATTTTGAGATAGGTATGAGTGTTTTGAATGCAATGCTAACAAGTAGACATTGTCCACGTTCGGAAACATTTAATTGTCTGGTTGTTGGCCTTTTGAAATCTGGGAATATTGATGGTGCATGTTTTGTTTTGGAAGAGATGGAGAAGAGAAAGGTAGAATTTGATTTGGGGAGCTGGGAAACAATAATAAAGTTTGCATGCAGTGAGAATAAGGGTGTTAGTGAGTTTATGACTGTACTTACATCTCCGTAG 1347 0.4276 MICVRSKTINPNALLHYANNGSLFHTHKPQHHERQTPKFRRRRIPFVTEVKTVEDPEEALSLFYRYKEQGFRHYYPSYAALLYKLARSRMFEAVETILAHMKDTDMQCRESVFIALFQYYGPQKAVELFNRMPQFNCVRTIQSFNALLNVLVDNDRFDEASDLFCRSSEMGFRPNTVSFNIMTKGWLGKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGLKGRRANEVTYALLMEGLCSVEKYDEAKKLMFDMAYRGCKPQPVNFGVLMNDLGKRGKVEEVKSLLHEMKKRRLKPDVVTFNILINYLCKEGKAVEAYKVLFEMQIGGCKPNAATYRMVVDGLCRIGDFEIGMSVLNAMLTSRHCPRSETFNCLVVGLLKSGNIDGACFVLEEMEKRKVEFDLGSWETIIKFACSENKGVSEFMTVLTSP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Lapu11g00537 448 Gene3D Tetratricopeptide repeat domain 52 124 IPR011990 GO:0005515
Lapu11g00537 448 Gene3D Tetratricopeptide repeat domain 125 242 IPR011990 GO:0005515
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Lapu11g00537 448 Pfam PPR repeat family 209 258 IPR002885 -
Lapu11g00537 448 Pfam PPR repeat family 314 363 IPR002885 -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Lapu11g00537 448 Gene3D Tetratricopeptide repeat domain 380 446 IPR011990 GO:0005515
Lapu11g00537 448 Gene3D Tetratricopeptide repeat domain 310 379 IPR011990 GO:0005515
Lapu11g00537 448 Gene3D Tetratricopeptide repeat domain 243 309 IPR011990 GO:0005515
Lapu11g00537 448 Pfam PPR repeat 388 416 IPR002885 -
Lapu11g00537 448 Pfam PPR repeat 143 172 IPR002885 -
Lapu11g00537 448 Pfam PPR repeat 284 311 IPR002885 -
Lapu11g00537 448 Pfam PPR repeat 177 206 IPR002885 -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Lapu11g00537 448 PANTHER OS03G0856100 PROTEIN 46 393 - -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 247 279 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 353 384 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 388 420 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 143 176 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 285 316 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 317 351 IPR002885 -
Lapu11g00537 448 NCBIfam pentatricopeptide repeat 212 240 IPR002885 -
Lapu11g00537 448 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00537 Lapu-Chr11 8773911 8775380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00537 144 435 Glycosyltransferase AT1G05670 28.082 5.05e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00537 - - gmx:100776556 807.749