Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00513 ATGATCAAAAGACTGGACACGAACGCGCAAGAGATAGAGATAGAGAGCCAAAACCCGAAAACGCCATCATCCAAACAGCCCCTTCTCTCTCTTTTAAAAGACACCCTGTGGTTTTTTCTCTGCCCTCTTAACTTTTTGCCCTCTCTCTCTCCTCTTATCGATTTCGTTCGCAGACAATCTCCTCCTCACAGTTTCGTCTTCTCGATCTCACTGGCAATCATGAGTGACAAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAAATGGATTTGACAGATCAACAGTTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGATACTGAGGGGCGATGCCCCGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGGTTGGTGAATGAAGTTAATATGGAGAAAAAGATGAAGACTCAGAAGGCGAAGTCTAAATCATCTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGACGAAGATCTTCTTCAGCGGAGAGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACAGCAGCGGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAGTGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAACAGATCACTGGTGCAACTAACAATATGCAACGGCGGTCAGGGAATGTATTACCTTGTCCACTGGATGACAATATGAACACTACTCCTGCAAAGCCTATTGTGAAAAATCCTTCGAGTAACTCTGTTAGCACTGTTAGAGGTTCACCTCCGAATGGAATCTATGAGAGACATGTTCCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCACAAATTATCAGCCCCCAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAGGACCAAACCTGATACAGGCAGCAGCTCACTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCGTCAAGTGATGGGAATCATAGTATGACAACTAGAGTGAAAAGTGAATTGCTGAAACCTGTTAAACAATACAACAATAGTGTGGACAGCCTGGTTAGTGCAGGAGAAAAATCTTCATCCTCCGAAGTTTCTCCTGTTCCTGTGAATTTGAACAGCCAGTTGTCTTCTCTACCATTGTCCCGAGATAGTGATGGCAATTGTACTACAGCAAACACAATAAGTTCTACTAACATGACTGGACAGTCTTGTATCTCTGGTCCTGAGGAAGCAATGCCTGCTACCAGTGAAGAGATTCCGAATTTGTCCATTGAGTTGTCCTCAATTAGCATTGATGGAAATGGTGAACATTGCAGTATAACCAAACCTAGTAGCCCACCTACTGATTATGTCTTGATTAAATCTCCTCAAATTCAAGGATCAGAATATAATGTTGACAGATTTAGAGATGTAATAACTACAAATATGGCTGGTAAAGCTACGTCAGATGATGTGGTTTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAATAGTATCAGATGCTGCGGAATTTGATGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCAACCGGTTTCCTTCATGTATCAAACCTTTCTAGCCCTTCTCTTCTGCAGCATGGTGAAAGTTGTACTGCCATGAATGCAGGTTCCGTATCTGCTGATGAATCTATATTACATGCATCTAATATATTAAGCAATGACCACCCGGAGAAATTGGTCAGCAGCAGCTCTTATGGTCTGCTTGATGAAAGAAATGGACATGATGTTGCTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATTTTGTCCATGGACTTTGATGCCTGGGATGACTCACTAACATCACCGCATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCAGTCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGGTTCTCCTTTGCAAGACAGGAGGAATCCAAAATCCAAATGTTTGATGCACATGCATCTTATGGTGTAAGCCACCAACGGCCAAATAATAAACTATTCCAGAATTTTACAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCGAATGGATTTCGTACCAGTAACTTTGAGGAAGCTGAAAATATGGCTGGTAGCTATTCCATTTCATCTAATAAGCTTTCGTCTATTTCAAGAGCTCAAGTTTCAGCCCCACCGGGATTTTCCATTCCTAGCAGGCCACCACCACCTGGTTTTTCTTCCAATGAGAGAGTGGAGCAGGCTTTTGATTCCATTTCTGGGAATTCTCTGCTTGACCATTCTTCCCTTTTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTGCTGGGGATATTGAATACATTGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCAGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTTGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTGTCGCCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTCGGTGATTCTTATGCTGTTTCTTCAAGGTTGGATCAATCACAAGTCAGTAATCTAGGCCCATTCCAACAATTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAAAGTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTCAATAAATTTTACTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTCTACAACAGAACATTTGGGATGTGA 3228 0.4176 MIKRLDTNAQEIEIESQNPKTPSSKQPLLSLLKDTLWFFLCPLNFLPSLSPLIDFVRRQSPPHSFVFSISLAIMSDKGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEVNMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPCPLDDNMNTTPAKPIVKNPSSNSVSTVRGSPPNGIYERHVPLPASAAWGTQATNYQPPAGGLSYPNGPSRTKPDTGSSSLAFSAAVTGSIQASDVTKRPPSSDGNHSMTTRVKSELLKPVKQYNNSVDSLVSAGEKSSSSEVSPVPVNLNSQLSSLPLSRDSDGNCTTANTISSTNMTGQSCISGPEEAMPATSEEIPNLSIELSSISIDGNGEHCSITKPSSPPTDYVLIKSPQIQGSEYNVDRFRDVITTNMAGKATSDDVVCNSREQCDWKLDSQSLIVSDAAEFDDDVTSFDNQRLKDPEVVCRSYLPKSTGFLHVSNLSSPSLLQHGESCTAMNAGSVSADESILHASNILSNDHPEKLVSSSSYGLLDERNGHDVAMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDNQSGPLNKSSSWKVHSNNQSRFSFARQEESKIQMFDAHASYGVSHQRPNNKLFQNFTERDLYMDKLGIANGFRTSNFEEAENMAGSYSISSNKLSSISRAQVSAPPGFSIPSRPPPPGFSSNERVEQAFDSISGNSLLDHSSLLRNSYQSPSAGNLGGAGDIEYIDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSMQQSANAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00513 1075 MobiDBLite consensus disorder prediction 382 442 - -
Lapu11g00513 1075 Pfam RING/Ubox like zinc-binding domain 82 134 - -
Lapu11g00513 1075 MobiDBLite consensus disorder prediction 343 362 - -
Lapu11g00513 1075 CDD RRM_CNOT4 178 277 IPR034261 -
Lapu11g00513 1075 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 269 IPR000504 GO:0003723
Lapu11g00513 1075 SMART rrm2_1 184 265 IPR003954 GO:0003676
Lapu11g00513 1075 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 74 150 - -
Lapu11g00513 1075 Gene3D - 184 265 IPR012677 -
Lapu11g00513 1075 SUPERFAMILY RING/U-box 73 139 - -
Lapu11g00513 1075 MobiDBLite consensus disorder prediction 338 363 - -
Lapu11g00513 1075 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 74 1069 IPR039780 GO:0004842|GO:0030014
Lapu11g00513 1075 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 263 IPR000504 GO:0003723
Lapu11g00513 1075 SUPERFAMILY RNA-binding domain, RBD 177 263 IPR035979 GO:0003676
Lapu11g00513 1075 MobiDBLite consensus disorder prediction 856 875 - -
Lapu11g00513 1075 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 184 265 - -
Lapu11g00513 1075 CDD mRING-HC-C4C4_CNOT4 81 131 IPR039515 -
Lapu11g00513 1075 ProSiteProfiles Zinc finger RING-type profile. 82 130 IPR001841 -
Lapu11g00513 1075 SMART rrm1_1 184 265 IPR000504 GO:0003723
Lapu11g00513 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Lapu11g00513 1075 MobiDBLite consensus disorder prediction 400 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00513 Lapu-Chr11 8427958 8437259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00513 K10643 - gmx:100801880 1747.64