Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00478 ATGAGAGCTTCACAAACTCTGTTCCTTTTGCTTTGGTTCTTCTGTGTTTATGCCCCTTCTTCATTTTCCACAAATGTCACGTACGACCATAGAGCATTGGTCATTGATGGCAAGCGACGAGTCTTGGTCTCTGGTTCTATTCATTACCCTCGTAGCACTCCAGAGATGTGGCCAGACATCATTCAAAAGTCCAAAGATGGAGGACTTGATGTGATTGAGACTTACGTTTTCTGGAACTTACACGAACCAATTCGAGGCCAGTATAATTTTGAAGGTAGGGGCGATTTGGTTAAATTTGTGAAGACAGTAGCAGATGCAGGTCTATATGTGCATCTCCGGATTGGTCCATATGCATGTGCTGAATGGAACTACGGGGGTTTCCCTCTTTGGCTACATTTTATTCCAGGAATTCAGTTCCGAACTGATAACAAACCATTTGAGGCAGAAATGAAGCGGTTCACTGCTAAGATTGTGGAGATGATGAAGCAAGAGAACCTCTATGCGCCACAGGGAGGACCTATTATTTTGTCTCAGATTGAAAATGAGTATGGAAACATTGATGCGCATTATGGTCCAGCTGCTAAATCCTACATCAAATGGGCTGCATCAATGGCAATATCTCTTCATACAGGGGTACCTTGGGTAATGTGCCAACAGCTAGATGCTCCTGATCCAATTATTAACACGTGCAATGGATTTTACTGTGCTCAATTCGAACCAAATTCCAATGCAAAACCAAAAATATGGACTGAGGGTTACACTGGATGGTTTCTTGCATTTGGCGATGCTGTACCACACAGACCTGTGGAAGATCTTGCATTTGCTGTGGCACGCTTTTTCCAACGAGGTGGAACTTTTCACAATTACTATATGTACCATGGAGGGACTAATTTTGGCAGGGCTTCTGGTGGGCCTTTTGTTGCTAGTAGTTATGATTATGATGCACCAATTGATGAGTATGGAATCATTAGACAGCCTAAGTGGGGCCACCTTAAAGACTTGCATAAGGCCATAAAACTTTGTGAAGAAGCACTGACAGCTACTGTTCCAACAATTACATCTCTCGGACCAAATATAGAGGCTGCAGTTTACAAGACAGGACTTGTATGTGCCGCTTTCCTTGCCAACATTGCCACATCTGATGCAAAAGTGACCTTCAATGGAAATTCTTATCACCTGCCCGCATGGTCTGTCAGCATCTTACCAGACTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTATGATTTCAAGCTTTGCAACTGAATCTTTAAAAGAAGAGGTTGGCTCGGGATGGAGTTGGATTAGTGAACCTATCGGTATTTCAAAGGCTGATTCATTCTCAAAATTTGGGTTACTGGAGCAAATAAATACAACTGCTGATAGAAGTGATTACTTGTGGTACTCATTAAGCATTGATCTTGATAGTGGTGCTCAAACTGTCCTTCACATTGAATCCCTTGGTCATGCTCTTCATGCATTCATAAATGGGAAACTTGCAGGGAGCGGAAAGGGCAACCATGACAAAGCTAAAGTCAAAGTGAACATCCCCATCACACTAGTAGCTGGGAAGAACACAATTGATCTCTTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGTGCAGGGATAACTGGCCCTGTGATATTGAAAGGTTTGAAAAATGGCAGCTCTATCGATCTGTCCTCCCGGATGTGGACATATCAGATTGGCCTTAAAGGTGAAGATTTAGGACCATCTAGTGGCAGTTCTGGACATTGGAATTCAAAATCTACCCTACCTACAAATCAACCGTTGATTTGGTACAAGACAAACTTTGTTGCTCCCTCTGGTACCAATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTGAACGGACAGAGCATTGGGCGATACTGGCCTACGTATGCCTCTCCAAGTGGTGGCTGTACTGATTCATGCAATTATAGAGGGGCCTATCAAGCATCCAAATGTCTCCAGAACTGTGGAAAGCCATCACAGATATTATACCATGTACCACGATCATGGTTACGACATAAAAGCAACACACTTGTATTATTTGAGGAAAGTGGAGGCAACCCTAAGCAAATCACGTTTGCTACAAAACAGATAAGAAGTGTGTGTTCTCATGTATCTGAATCTCACCCTCCACGTGTAGACTTATGGAATTCAGATGCACAATCAGGAAGGAAAGTAGGGCCTGAACTGTTACTGGAGTGCCCTTAA 2271 0.4306 MRASQTLFLLLWFFCVYAPSSFSTNVTYDHRALVIDGKRRVLVSGSIHYPRSTPEMWPDIIQKSKDGGLDVIETYVFWNLHEPIRGQYNFEGRGDLVKFVKTVADAGLYVHLRIGPYACAEWNYGGFPLWLHFIPGIQFRTDNKPFEAEMKRFTAKIVEMMKQENLYAPQGGPIILSQIENEYGNIDAHYGPAAKSYIKWAASMAISLHTGVPWVMCQQLDAPDPIINTCNGFYCAQFEPNSNAKPKIWTEGYTGWFLAFGDAVPHRPVEDLAFAVARFFQRGGTFHNYYMYHGGTNFGRASGGPFVASSYDYDAPIDEYGIIRQPKWGHLKDLHKAIKLCEEALTATVPTITSLGPNIEAAVYKTGLVCAAFLANIATSDAKVTFNGNSYHLPAWSVSILPDCKNVVLNTAKINSASMISSFATESLKEEVGSGWSWISEPIGISKADSFSKFGLLEQINTTADRSDYLWYSLSIDLDSGAQTVLHIESLGHALHAFINGKLAGSGKGNHDKAKVKVNIPITLVAGKNTIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGSSIDLSSRMWTYQIGLKGEDLGPSSGSSGHWNSKSTLPTNQPLIWYKTNFVAPSGTNPVAIDFTGMGKGEAWVNGQSIGRYWPTYASPSGGCTDSCNYRGAYQASKCLQNCGKPSQILYHVPRSWLRHKSNTLVLFEESGGNPKQITFATKQIRSVCSHVSESHPPRVDLWNSDAQSGRKVGPELLLECP* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00478 756 Gene3D Glycosidases 20 341 - -
Lapu11g00478 756 SUPERFAMILY Galactose-binding domain-like 575 739 IPR008979 -
Lapu11g00478 756 FunFam Beta-galactosidase 290 415 - -
Lapu11g00478 756 Pfam Glycosyl hydrolases family 35 33 337 IPR031330 -
Lapu11g00478 756 Pfam Beta-sandwich domain in beta galactosidase 350 414 IPR041392 -
Lapu11g00478 756 FunFam Beta-galactosidase 583 723 - -
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 607 621 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 634 650 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 SUPERFAMILY (Trans)glycosidases 24 342 IPR017853 -
Lapu11g00478 756 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Lapu11g00478 756 PANTHER BETA-GALACTOSIDASE RELATED 16 733 IPR001944 GO:0004553|GO:0005975
Lapu11g00478 756 Gene3D - 579 724 - -
Lapu11g00478 756 SUPERFAMILY Galactose-binding domain-like 398 563 IPR008979 -
Lapu11g00478 756 Gene3D - 444 569 - -
Lapu11g00478 756 FunFam Beta-galactosidase 416 562 - -
Lapu11g00478 756 FunFam Beta-galactosidase 22 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00478 Lapu-Chr11 8036774 8047847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00478 23 684 Glycoside Hydrolase AT2G28470 75.037 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00478 - - gmx:100793198 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00478 11 8036774 8047847 Lapu11g00478 11 8036774 8047847 ECH