Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00386 ATGGCTCCGTTTCCGTCCGAGAACGGCGTCGAAGGAGATGACGAGAGAGAAGAGGAAGAAGAAGACGAAGAAGAAGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTATCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCGTCGTGTATTGCCGTCGCCGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTGATAAACAGCCTTTTCACCGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTTGCATTGGATCCTGATTATGCACGAAAAATGTCCAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGTGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAGCCACGAGGGAGCCCGCGCCCTGAGCTTTTACTTCCTCACCTGGTCTGGCAGGATGATACCCTCTTGGTTATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAAATCACCAAAGGGCAGCAAATGGGTCATTCAGGCAAGTTCCTCTGTCTGGTGTGGCCCAGGTGGATATTGTGGCATCTTTCCAAACCAGCTATTTCATCTCAGGGCTTGCTCCATTTGGTGATGCTTTGGTTGTTCTTGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCTCGGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGATTAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTGCCAGTACATGGATTCGAGCATTACAGGGCTAAAGACTATTCTCTTGCACATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCGGGTCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGCGAAGCAGCATCTCTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCTTGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCTTCTGTAATCTATTCTGCATTACCTGTGATTTCAGCCATTGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCATTGGCAGAGTTGTATGTAATCAATGGGCAATATGAGAAGGCCTTCTTGTTATATGCCGATCTTATGAAACCGGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGGTTGTTCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTTTGTTGATCCAAAATAGGGACTTAATAAGTCCACCTGAAGCTGTGAAGCAACTTCTAAATGCTGATGACAAGAGTGATCGTAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTACTGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATAAACAATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTGATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTCGACCCCCTTTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGGCATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAGTCAAATATTACAAAGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGCCACGGGTGAAAATGAGTGACACTCGTGCTTCTCAGGTATTTGAGAAATCCCCGAGTCCGAGAACTATGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAACTTGTCTCATGGATTCCTCTTACACTAGTGGTAACAAGAAAGAAACCACATCCCTAGGTACAGAAATGTATGATGATTACAATGGTTATGAGGACGATGCCAGCGATGACTTTGAAGATGAAGAAACCAAGTCTGGTGGCCCTCGTATGCGCTGTATATTGTGTACTACTGCTGCTAGTTGA 2859 0.4386 MAPFPSENGVEGDDEREEEEEDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHQRAANGSFRQVPLSGVAQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSSAPSRQGNAQRPEVRLVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPPEAVKQLLNADDKSDRRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINNLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARHGVSLGNEEDEPRVKMSDTRASQVFEKSPSPRTMEVKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSGNKKETTSLGTEMYDDYNGYEDDASDDFEDEETKSGGPRMRCILCTTAAS* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00386 952 MobiDBLite consensus disorder prediction 1 37 - -
Lapu11g00386 952 CDD RING-H2_Vps8 865 948 - -
Lapu11g00386 952 SUPERFAMILY RING/U-box 860 904 - -
Lapu11g00386 952 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 947 IPR045111 GO:0006623
Lapu11g00386 952 SMART ring_2 867 947 IPR001841 -
Lapu11g00386 952 MobiDBLite consensus disorder prediction 11 33 - -
Lapu11g00386 952 PIRSF Vps41 2 908 IPR016902 GO:0034058|GO:0046907
Lapu11g00386 952 Coils Coil 12 32 - -
Lapu11g00386 952 FunFam Vacuolar protein sorting-associated protein 41 homolog 6 278 - -
Lapu11g00386 952 Pfam Region in Clathrin and VPS 607 749 IPR000547 GO:0006886|GO:0016192
Lapu11g00386 952 MobiDBLite consensus disorder prediction 827 858 - -
Lapu11g00386 952 SMART WD40_4 80 119 IPR001680 GO:0005515
Lapu11g00386 952 SMART WD40_4 168 204 IPR001680 GO:0005515
Lapu11g00386 952 SMART CLH_2 606 753 IPR000547 GO:0006886|GO:0016192
Lapu11g00386 952 SUPERFAMILY WD40 repeat-like 52 245 IPR036322 GO:0005515
Lapu11g00386 952 FunFam Vacuolar protein sorting-associated protein 41 homolog 547 812 - -
Lapu11g00386 952 Gene3D - 6 276 IPR015943 GO:0005515
Lapu11g00386 952 Gene3D Tetratricopeptide repeat domain 539 812 IPR011990 GO:0005515
Lapu11g00386 952 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 606 753 IPR000547 GO:0006886|GO:0016192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00386 K20184 - gmx:100804340 1793.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00386 11 6956943 6968593 Lapu11g00386 11 6956943 6968593 ECH