Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00328 ATGGTTTGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAGTGCTCTGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGTTATGTTTGCAGAGGGTTCTACAGTGAGTGGGCTAGTTGCATTTTCAGCACCAGAAACCCTCCAAGAAAACAGGAATCCATTAAGCTACCAGATTCTGTTCAGAACTCTCTGCCTTCAGATTTGCTAAAGAAATATCAGGACCCAAGTCACAGGCCTCACAGGGATCTAGGCTTAGCTGAAAAGCCCTTTACTGGAATGTTGATATCTCTGATGGGTCGTCTTACTCGGACGCATAATTATTGGAAAACAGCTATTGAAAAGCATGGAGGGAAAGTGGCAAACTCTATACTAGGGGCTACTTGTTTGGTAGCTTCACCAGCTGAGCGAGAACGTGGTGGCACATCCAAACTTGCAGAAGCCATGGAGAGAGGTATACCAGTGGTTAGGGAGGCCTGGCTGATTGACAGCATTGAAAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGAAGGCAAGGGAATTCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCCGAACTCAAACTTTATGGGAAGAGAGGGGTCTACAAAGATTCTAAGTTGCAGGAACAAGGTGGAAAGATATTTGAAAGAGATGGGATATTATACAACTGTGCCTTCTCCCTCTGCGACCAAGGGCGTGGACTGAATGACTACTGTATCATGCAACTGATTGATGTCCCAGAAAATCGTTTGCACATGTACTTCAAGAAAGGGAGAGTTGGCGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTGGGACAATGTAGGCAGTTCTCTGAAAGAGTTTGCGAGACTCTTCGAGGAAATAACAGGAAATGAGTTTGAACCTTGGGAAAGAGAGAAGAACTTCCAGAAGAAGCCATTGAAGTTCTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACATGGAGCACTAGGTCTTCGGCAGCTGGGGATAGCAGTAACACACTGTAAACTTGAGCCTTTGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGAGATATACAAGTATGCATTGATGGAGATGGGTTACGACTCTCCGGACCTTCCAATAGGAATGGTTACAAATCTTCATCTGAAAAGATGTGAGGACGTTCTCTTAGAATTCATAGATAAGGTGAAATCATTGAAAGAAACTGGGCCCAAGGCCGAGGCTGTTTGGACTGATTTTAGCCAAAGATGGTTCACTCTGATGCATTCCACAAGGCCTTTCAATTTTAGAGATTATCAAGAGATTGCTGACCATGCTGCAGCTGCCTTGGAGGGGGTGAGAGACATAACTATGGCTTCTCACCTCATAGGAGATATGACTGGCTCAACCATCGATGACCCATTATCAGAGACATACAAGAAATTGGGTTGCTCAATTTCTCCCCTGGACAAAAGTTCAAGCGATTATCAGATGATTGTAAAATATCTTGAAAGTACTTATGAGCCAGTCAGAGTTGGTGACATAGATTACGGGGTGTCGGTGGAAAACATTTTTGCGGTGCAAACAGGTGGTTGCCCTTCCTATGAAGACATAGTTAAACTGCCAAATAAAGTTCTTTTATGGTGTGGATCACGAAGCTCAAACCTTATGAGGCACTTGCACAAGGGATTCTTGCCAGCAATATGCTCACTACCGGTTCCGGGTTACATGTTTGGCAAAGCTATTGTCTGTTCCGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCTATTGTTTCTCTAGGGAATGAGATTACCGAGATTAAAAGCCCACCCGAGGATACTTCATCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGTCTGGGGAAGAAGAAAACAGATGAATCAGAACACTTTGTTTGGAAAGATGATATAAAAGTTCCTCGCGGTAAACTAGTTGCCTCAGATCATCAAGATAGCCCCCTGGAATATAACGAGTATGCTGTCTACGATCCTAAGCAGGCACGCATAAGCTACATGGTGGAAGTGAAGTATGAAGAGAAGGGTGTGGAGGTTGACACAGCTGAGTGA 2151 0.4458 MVCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCIFSTRNPPRKQESIKLPDSVQNSLPSDLLKKYQDPSHRPHRDLGLAEKPFTGMLISLMGRLTRTHNYWKTAIEKHGGKVANSILGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLIDSIEKQEPQPLEAYDLVSDLSVEGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDSKLQEQGGKIFERDGILYNCAFSLCDQGRGLNDYCIMQLIDVPENRLHMYFKKGRVGDDPNAEERLEEWDNVGSSLKEFARLFEEITGNEFEPWEREKNFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEDVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALEGVRDITMASHLIGDMTGSTIDDPLSETYKKLGCSISPLDKSSSDYQMIVKYLESTYEPVRVGDIDYGVSVENIFAVQTGGCPSYEDIVKLPNKVLLWCGSRSSNLMRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIVSLGNEITEIKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPRGKLVASDHQDSPLEYNEYAVYDPKQARISYMVEVKYEEKGVEVDTAE* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00328 716 Pfam Poly(ADP-ribose) polymerase, regulatory domain 354 487 IPR004102 GO:0003950
Lapu11g00328 716 Gene3D - 11 74 IPR038650 -
Lapu11g00328 716 SMART PADR1_2 3 52 IPR012982 GO:0008270
Lapu11g00328 716 CDD parp_like 353 704 - -
Lapu11g00328 716 SUPERFAMILY BRCT domain 88 190 IPR036420 -
Lapu11g00328 716 Gene3D - 491 707 - -
Lapu11g00328 716 SMART WGR_cls 237 320 IPR008893 -
Lapu11g00328 716 SUPERFAMILY ADP-ribosylation 490 707 - -
Lapu11g00328 716 Gene3D BRCT domain 86 184 IPR036420 -
Lapu11g00328 716 Pfam PADR1 (NUC008) domain 3 51 IPR012982 GO:0008270
Lapu11g00328 716 Pfam BRCA1 C Terminus (BRCT) domain 88 165 IPR001357 -
Lapu11g00328 716 CDD BRCT_PARP1 91 166 - -
Lapu11g00328 716 ProSiteProfiles BRCT domain profile. 86 178 IPR001357 -
Lapu11g00328 716 SUPERFAMILY WGR domain-like 202 331 IPR036930 -
Lapu11g00328 716 Gene3D - 350 490 IPR036616 GO:0003950
Lapu11g00328 716 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 1 83 IPR047572 GO:0008270
Lapu11g00328 716 SMART BRCT_7 88 168 IPR001357 -
Lapu11g00328 716 Pfam WGR domain 237 316 IPR008893 -
Lapu11g00328 716 Pfam Poly(ADP-ribose) polymerase catalytic domain 501 704 IPR012317 GO:0003950
Lapu11g00328 716 ProSiteProfiles PARP catalytic domain profile. 481 712 IPR012317 GO:0003950
Lapu11g00328 716 CDD WGR_PARP1_like 227 333 - -
Lapu11g00328 716 FunFam Poly [ADP-ribose] polymerase 491 707 - -
Lapu11g00328 716 ProSiteProfiles WGR domain profile. 226 326 IPR008893 -
Lapu11g00328 716 ProSiteProfiles PARP alpha-helical domain profile. 353 472 IPR004102 GO:0003950
Lapu11g00328 716 PANTHER DNA LIGASE 2 705 - -
Lapu11g00328 716 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 353 489 IPR036616 GO:0003950
Lapu11g00328 716 FunFam Poly [ADP-ribose] polymerase 348 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00328 Lapu-Chr11 6327091 6331417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00328 K10798 - gmx:100788978 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00328 11 6327091 6331417 Lapu11g00328 11 6327091 6331417 ECH