Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00303 ATGGCTATGGCGCCTCGGAAACCTCGCGAGCGTCAAATGCTGTTCGACTCAGTCATCGCGCTCGTCTTCATCCTCGTCGCCTGCGTCGACCTCGGTTACGGCGCCACTGTCGTCGACGTCTACCGCCTCATCCAGTACGACATGTCCGGAGTTCCCTTCGGATCTCGACTCGCCAGCCTCAACCATCACGCTGCTTCGCTCCACTTCTCTCCACACGCTGATCTCTCTCGCACCGTCCTCCTCATACCTCTTCGCGAACTTAACATGTCTTTTGTCAAAGAATATATTGCTGAAAGCAAGCCTCTTGGGGGTTTAATATTTTTGCTTCCCCGGATGTTCAGTTTTGAAAACAAAGATGGTATGGGAAGTAGCCATCAAGATGGGAGTGAAGAACCGCTGAAGAATGTATTGGCTGAACTTGAACACATACTTATACACGCCAATTTACCATATCCTGTTTATTTTGCATTTGAGGACGACAATATTGATGCTGTGTTAGCTGATATCAAGAAGAATGATGTCACTGGTCAGCCTGCTACTGCAACAACTGGCGGATACAAATTTGTTGTTTCAGCCGCAGAACCAAGGAAAGTTGTATCTCCTCCTATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATTCTCATCAATTACCCACCATTGCAATAGTGGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAACGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGCTGTTTTCTCTATTGTATTCTAATCCAAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACATCTGGTGGGCCTTACAACTACAATGGAACTCGTAAGTGGCTTCGAAGCTTTGATCAACGCCTGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCTTGGGAAAATGAGTTATGGATTCATGTATCTAAGCCTCCAGAAAATGCCTTCATTAAGAAAATTGTGGAAGATTTTTCAAGTGTTGCAGAAGAATTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATAAACATTTCCAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACTCTATCTGAACTCTCTACAGCACCTGAATTGCTAGAGAAGACTGGTGGTTTGGTTGACGGCAGGCATTTTGTTAATGAAGCGACTATTGTCAGAAGTGTGAAATTAATTGCTGAAAGTCTTGCGAGGCATATTTATGGACATCAAGGAAAGAACATTAAGATATTTGCAGACAACACTAACTTGGCTGTTAATCCTTCTTATGTTCGATCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTAGCTCCATTTTTCTCCAAAGATGATCCTTTTGTCATGGCACTCAAAAAGGAATTAGAAGATCACACTGACGAGGTAAATCTGCATAGAGATGTGCTAGATGGAATGTTCACTTTCTATGATTCGACCAGGGCAAAGCTGAACATTTATCAGGTTGCCAGTGTCACATTTGACTTGCTGTTGCTTCTAGTGTTGGGATCGTATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCATCTCGAAAAGTGAAAACTGCATAG 1695 0.4372 MAMAPRKPRERQMLFDSVIALVFILVACVDLGYGATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPRMFSFENKDGMGSSHQDGSEEPLKNVLAELEHILIHANLPYPVYFAFEDDNIDAVLADIKKNDVTGQPATATTGGYKFVVSAAEPRKVVSPPITNIQGWLAGLKTDDDSHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSFDQRLRESIDYAICLDSIGSWENELWIHVSKPPENAFIKKIVEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLEKTGGLVDGRHFVNEATIVRSVKLIAESLARHIYGHQGKNIKIFADNTNLAVNPSYVRSWLDVLSQTPRVAPFFSKDDPFVMALKKELEDHTDEVNLHRDVLDGMFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00303 564 Coils Coil 475 495 - -
Lapu11g00303 564 CDD M28_nicalin_like 137 430 - -
Lapu11g00303 564 Pfam Nicastrin 225 362 - -
Lapu11g00303 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Lapu11g00303 564 Gene3D Zn peptidases 150 425 - -
Lapu11g00303 564 PANTHER NICALIN 13 564 IPR016574 GO:0009966|GO:0016020
Lapu11g00303 564 PIRSF Nicalin 3 559 IPR016574 GO:0009966|GO:0016020
Lapu11g00303 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lapu11g00303 564 SUPERFAMILY Zn-dependent exopeptidases 194 388 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00303 7 562 EF-hand Containing Proteins AT3G44330 73.214 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00303 K26499 - gmx:100779713 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00303 11 6085842 6097453 Lapu11g00303 11 6085842 6097453 ECH