Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00294 ATGGCGCCTTTGAACTCAGCTGCTGCCACTGTCAGAAGGCTTGAGGGAAAAGTGGCCATTGTAACTGGTGGTGCGAGCGGCATAGGTGAGGCCACTGCTAGACTCTTCTCTCAGCATGGGGCTCATGTGGTGATAGCTGATATTCAAGACGAGTTGGGTCTCTCTCTTTGCAAAGACTTGGAATCCGCTATATATGTTCATTGTGATGTGACAAAGGAAGAAGACATTGAAAACTGCGTGAACATAGCGGTTTCCAAATATGGGAAGCTCGACATCATGTTTAACAACGCTGGTGTATGTGATGAGTTCAAAAGCAGCATAGTTGACAACACCAAGTCTGAGTTTGAGAGAGTGATAAGTGTGAACTTGGTAGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGGGTCATGATTCCTGCTAAAAGGGGCTGCATAATTAATACATCTAGTGTTGCTGGATGCACAAGTGGAGGAGCTCCACATGCCTACACCACTTCAAAGCATGCCCTAGTGGGACTAATGAAAAACACTGCGGTGGAGCTTGGACAATTCGGCATTCGGGTGAACTGTGTGTCCCCTTATGTGGTTGCCACACCATTGTTAAATAAATACTTCAATCTTGATGAAGAAGGAGTTCGTGAGGTTTATTCCAACCTAAAAGGTTCTTATCTTGTGCCTAACGATGTGGCTGAAACTGTTCTTTACTTGGTAGAGTCTAAGTATGTCAGTGGTCACAATCTGGTGTTAGATGGAGGGTTCTCCATTACAAATGCAGGATTGTATGTTGGCAAGTCTAAGTAA 801 0.4494 MAPLNSAAATVRRLEGKVAIVTGGASGIGEATARLFSQHGAHVVIADIQDELGLSLCKDLESAIYVHCDVTKEEDIENCVNIAVSKYGKLDIMFNNAGVCDEFKSSIVDNTKSEFERVISVNLVGPFLGTKHAARVMIPAKRGCIINTSSVAGCTSGGAPHAYTTSKHALVGLMKNTAVELGQFGIRVNCVSPYVVATPLLNKYFNLDEEGVREVYSNLKGSYLVPNDVAETVLYLVESKYVSGHNLVLDGGFSITNAGLYVGKSK* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00294 266 Gene3D - 4 263 - -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Lapu11g00294 266 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Lapu11g00294 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 255 IPR036291 -
Lapu11g00294 266 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 9 257 - -
Lapu11g00294 266 FunFam Short-chain dehydrogenase reductase 3 258 - -
Lapu11g00294 266 CDD secoisolariciresinol-DH_like_SDR_c 13 254 IPR045309 GO:0016616
Lapu11g00294 266 Pfam Enoyl-(Acyl carrier protein) reductase 23 254 - -
Lapu11g00294 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Lapu11g00294 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Lapu11g00294 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00294 Lapu-Chr11 6010265 6011438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00294 5 255 Acyl Lipid Metabolism Gene Families AT1G24360 29.231 1.84e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00294 - - gmx:100783169 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00294 11 6010265 6011438 Lapu11g00294 11 6010265 6011438 ECH