Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00293 ATGGCCCCTCTTTCTGTGGTCTCAGCTGCTGTTAGAAGGCTAGAGGGAAAAGTGGCGATTATCACTGGTGGTGCCAGCGGTATAGGTGAGGCCACTGCAAGACTCTTCTCTGAGCATGGAGCACATGTGGTGATAGCTGATATTCAAGACGATTTGGGTCTTTCTCTTTGCAATGACTTGGAATCTGCTACATATGTTCATTGTGACGTGACAGAGGAAGAAGACGTTGAAAACTGCGTGAACATAGCAGTTTCCAAGTATGGGAAGCTGGACATCATGTTCAACAACGCTGGTTCAAGTGATGAGTTCAAAAGAAGCATACTCGACAACACCAAGTCTGATTTTGAGAGAGTGTTAAGTGTGAACTTGATAGGTCCTTTTCTGGGAACAAAGCACGCTGCAAGGGTCATGATTCCTGCTAAAAGGGGCTGCATAATTAACACAGCTAGTATTGCTGGATGCATAGGTGGAGGGGCTTCACATGCCTACACCAGTTCAAAGCACGCCCTAGTGGGACTGATGAAAAACACTGCGGTGGAGCTTGGAAAGTTCGGTATTCGGGTGAACTGCGTGTCTCCTTTTGCAGTTGCCACACCCTTGTTATATAAATATTTCAAACTTGATGAAGAAGGAGTTCGTGAGCCTTATTTTAACCTAAAAGGTTCTCATCCAGTGCCTAACGATGTGGCCGAAGCTGCTCTTTACTTGGCAAGTGATGAGTCCAAGTATGTTAGTTCTCATAATCTTGTGTTAGACGGAGGATTGATCAATTCAAATGTAGGATTTCCTATGTTTGGGTTATCTAAGTAA 810 0.4457 MAPLSVVSAAVRRLEGKVAIITGGASGIGEATARLFSEHGAHVVIADIQDDLGLSLCNDLESATYVHCDVTEEEDVENCVNIAVSKYGKLDIMFNNAGSSDEFKRSILDNTKSDFERVLSVNLIGPFLGTKHAARVMIPAKRGCIINTASIAGCIGGGASHAYTSSKHALVGLMKNTAVELGKFGIRVNCVSPFAVATPLLYKYFKLDEEGVREPYFNLKGSHPVPNDVAEAALYLASDESKYVSSHNLVLDGGLINSNVGFPMFGLSK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00293 269 FunFam Short-chain dehydrogenase reductase 3 259 - -
Lapu11g00293 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Lapu11g00293 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Lapu11g00293 269 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Lapu11g00293 269 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 259 - -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Lapu11g00293 269 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Lapu11g00293 269 Pfam Enoyl-(Acyl carrier protein) reductase 23 255 - -
Lapu11g00293 269 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 150 178 IPR020904 GO:0016491
Lapu11g00293 269 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 255 IPR036291 -
Lapu11g00293 269 CDD secoisolariciresinol-DH_like_SDR_c 13 255 IPR045309 GO:0016616
Lapu11g00293 269 Gene3D - 5 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00293 Lapu-Chr11 5995501 5997434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00293 14 265 Acyl Lipid Metabolism Gene Families AT1G63380 30.451 6.84e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00293 - - gmx:100794412 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00293 11 5995501 5997434 Lapu11g00293 11 5995501 5997434 ECH