Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00292 ATGGGAAGTGTTACAGGGGTCTCCACTGCAATTGCCAGAAGATTAGAAGGGAAGGTGGCGTTGATCACAGGTGGAGCAAGTGGCATAGGGGAGTGTACGGCGAGACTGTTCGCGAAGCATGGAGCCAAAGTAGTGATCGCTGATATCCAAGACGAGTTAGGTCACTCAGTTTGCAAGGAGATAGACTCCTCCTTCTACCTCCACTGCGACGTCACAAAAGAGGAAGACGTGGAGCGTGCCGTGAACACAGCCGTTTCTAGGTTCGGGAAACTAGACATCATGCACAACAACGCAGGGATCAACGGAGCGTGGCACCCCAGCATAGTGCACAACGACAAGTCCCAATTCGAGAAAGTGATTAGCGTAAACTTGGTCGGTGTCTTCCTCGGAATGAAGCATGCGGCGAGGGTAATGGTCCCTTCGCGACGTGGCAGCATAATCGCAACCGCAAGCGTGTGTGGACGCATAGGTGGCCTGTCTTCGCACGCTTACACGTGCTCCAAGCATGGCATTGTGGGGCTGGTACGAAACGCTGCAGTGGAGCTTGGACCCTCTGGGGTACGCGTGAATTGTGTGTCTCCTTACGCGGTTCCTACGCCGATGAGTAAGAGTTTTCTTAACACTGACGATGAGGGGATTGCTGCGCTTTATTCCAATCTGAAAGGTGTTAGTCTTAAACCCGAAGATGTGGCTGAAGCTGCACTTTACTTGGGGAGTGATGAGTCGAAGTATGTTAGTGGGCATGACCTTGTTGTGGACGGAGGGTTCACTGTGGTGAATGCTGGTTTGAATTCGTTTAAGCAATTGGTTTAG 813 0.5178 MGSVTGVSTAIARRLEGKVALITGGASGIGECTARLFAKHGAKVVIADIQDELGHSVCKEIDSSFYLHCDVTKEEDVERAVNTAVSRFGKLDIMHNNAGINGAWHPSIVHNDKSQFEKVISVNLVGVFLGMKHAARVMVPSRRGSIIATASVCGRIGGLSSHAYTCSKHGIVGLVRNAAVELGPSGVRVNCVSPYAVPTPMSKSFLNTDDEGIAALYSNLKGVSLKPEDVAEAALYLGSDESKYVSGHDLVVDGGFTVVNAGLNSFKQLV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Lapu11g00292 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Lapu11g00292 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Lapu11g00292 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Lapu11g00292 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Lapu11g00292 270 FunFam Short-chain dehydrogenase reductase 3 262 - -
Lapu11g00292 270 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Lapu11g00292 270 CDD secoisolariciresinol-DH_like_SDR_c 14 257 IPR045309 GO:0016616
Lapu11g00292 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 259 IPR036291 -
Lapu11g00292 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Lapu11g00292 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 260 - -
Lapu11g00292 270 Gene3D - 5 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00292 Lapu-Chr11 5987668 5988958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00292 15 258 Acyl Lipid Metabolism Gene Families AT1G63380 33.077 2.89e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00292 - - gmx:100810754 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00292 11 5987668 5988958 Lapu11g00292 11 5987668 5988958 ECH