Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00286 ATGGGTGTGCCTTTGTTCTATAGATGGTTGACTAACAAATATCCCAAGGTAGTGCAAGATGTAGACTCCGCCATGCAAGACCCAAGTGGACTGAAGTATGATAACTTGTATCTTGACATGAATGACATCATCCACACTTGCTTTCACCCTGATAAGAATCATGACAATATTCCATTTCCGGCTACATTCGAAGATGTGTTCAGAAATGTGTTTGACTACATTGATCGACTTGTTGACACCGTTAGGCCTCGCAAGCTCGTTTACATGGCTATTGACGGGGCTGCCACACGTGCCAAAGCGAACCAGCAGCGAGCAGGACGTTTTCAAACTGCTAAGAACCATGAAATTTATGAAGCTGAGGAAGATAGGCTAAGGAAACAGTTTGAAATGGAAGGGAAACAAGTTCTTCCTAAACACGAATCCGAAGTGGCAGATTCCAATATTATAACACCAGGCACTGAGTTCATGCATGAACTCTCAAATGCACTTAAAAGCTATATCTCTTCAAGGATAATTTGTAACTCATTATGGAAGGATATTATGGTAATTCTCTCTGACGCTAGTGTTCCCGGGGAAGGGGAACATAAGATTATGTCATTCTTACGCAAGCAGCGTAGTCTGGAAGAGTATGATCCAAATACCAGCCACTGCATATATGGCTCGGATGCTGATCTTATAATGCTTGCTTTGGCGACTCATGAGCCCCATTTTTCAATATTAAGAAAGGATATCTTTGTTCAGCACTCAAAAGTTGCTGCCAATCCTTTCAAGTTTTTGCACATTTGGTTATTGAGGGAGTATCTTGAGTTGGACATGAAGATAGAAAATCCTTCAAAAAATTTTAGCATTGAGTTTGAGCGGATAATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTGCCCCGCATGCCATCTTTGGATGTTCATGAGGGGTCTCTTGATTTACTAATGACTGTTTACAAGGAAGAATTTCATGCACTTGGAGGATATCTTGTGGACATGAGCAGGGTTGGGGAGAAAAATGCTGCTTTTGTGAACTTATCAAGAGTTGAAAAATTTATACTTGAGGTTGGTACATATGAAGAGAAAATCTTTAAGAGAAGATCTGAAATACGAGAACGTAAATTGAAAAGGCTTATTCAAAATAATGAGGATTCTAAGCGGGAAGAAAATAATGCAAAATGTTTCTCGGATTCAAAGAAATTGTCTGTTTTGGTCAATAATGTTTCTGCTACACTTGCTGAAATTGTGCAAAACACAAAGGATTTAGAAGATGAATTGAAGAGAAGAATTGGAGAAAAATGTGACTTATTTAGAAGTGGAGATTTCCCAATTGACAAGATAAAATTGGGAGCACCTGGTTACAAAGAAAGATATTATAAAGCGAAGTTTTGTGTGGAAACTCCTACTGACATTGAGGCGAAAAGGAAAGAAATAGTCCAGAAGTACACGGAAGGATTGGTGTGGGTTCTTCAATGCTATTTTTCAGAAGTTGCTTCGTGGACATGGTTTTATCCATTCCACTATGGTCCATTTGCTTCGGACTTAAAGGGCATGGGTCAAGTGAGAGTAAAATTTGAAAAAGGTCTCCCATTCTCACCACTTGATCAACTTTTAAGTGTCCTCCCCCCAGCAAGTTCTCATGCACTTCCAAAAGCCTATGCACAACTAATGCTGGATGAGCAATCTAGAATACTTGACTTTTATCCTCATGATTTTGAAGTTGACACTGAAGGAAAGCGCTTCACGTGGCAGGGAATTCCCAAACTTCCTTGGATAGATGATAGCCGGCTTGTGGCTGAAACCAGAGAACTGAAAAATGAATTATCTGAAAAGGAGGCCATAAGAAATTCACTCAAGGCTGATAGCTTGTTTGTTAGAAGCTCTTCCAAATTAGCAGAGAAATTTGGCTCTCTATATGTAGACCCAAATGCGCCTTGCAAGTTAGACACAAGAATAAGTGATGGCATTGGGGGTACCATAAGTCTTTGCCATGAGTTTGTTGACAAGCCTTGCTTGGACAATGATGACAACAAAGAAGATCGTGTCTTATGTGTCTATTACGAGCTTCCGGCTGGTAGTAATCATATTCCTCGTTTATTATCGGGTGTGAGCCTTCCAGAGAAGACAATCTTTCAAGGTGATATCATGGAAACTGTATTGTGGCATGAATGTCAGAAATATTTTAGTCGTTTTGAGAGGGTGCAAAATCAAGACAAATGGAGGAGTGAAAACAGCAGCAATACTTTAAGGTTTTTCTCAAATGCAAGTGGCCAACATGCAAGAAGCTTTTCATCAAATACAAGTAGCCAACAACACGCACGAAAGTTTTCATCAAATGCACCTTCCTTCCTTCACAAAGGTGCTGGTGTTGGATGGGGAGGTAGGGGGAGAAAAATTGATACAGTGAAAAATGAGAGAATACCATCTCATCCTCATAAACGACATAATGATGCAGGCTCTTATCATCTCACAACTACAAGTGACACCACATCACAACACATTGTGGATGACTTTAGACAAGTCAGAATATCAGAGTCAGGTCCCTGTCCAAATTCTACCGGCAGTTTTCATTCACGACCTTATAATAGTGGTAGCATGAATCAGTCAAAAAATGCTCCTAATCATCAAGCTTCACAAGGTTGGGGTGCATCTAGTAGCAGTTCATTGTGTCCACAATGGAGAGGTGGAAAATCTCACCAAATGAGAGATCAGAATCGTTGGTAA 2739 0.3998 MGVPLFYRWLTNKYPKVVQDVDSAMQDPSGLKYDNLYLDMNDIIHTCFHPDKNHDNIPFPATFEDVFRNVFDYIDRLVDTVRPRKLVYMAIDGAATRAKANQQRAGRFQTAKNHEIYEAEEDRLRKQFEMEGKQVLPKHESEVADSNIITPGTEFMHELSNALKSYISSRIICNSLWKDIMVILSDASVPGEGEHKIMSFLRKQRSLEEYDPNTSHCIYGSDADLIMLALATHEPHFSILRKDIFVQHSKVAANPFKFLHIWLLREYLELDMKIENPSKNFSIEFERIIDDFIFMCFFAGNDFLPRMPSLDVHEGSLDLLMTVYKEEFHALGGYLVDMSRVGEKNAAFVNLSRVEKFILEVGTYEEKIFKRRSEIRERKLKRLIQNNEDSKREENNAKCFSDSKKLSVLVNNVSATLAEIVQNTKDLEDELKRRIGEKCDLFRSGDFPIDKIKLGAPGYKERYYKAKFCVETPTDIEAKRKEIVQKYTEGLVWVLQCYFSEVASWTWFYPFHYGPFASDLKGMGQVRVKFEKGLPFSPLDQLLSVLPPASSHALPKAYAQLMLDEQSRILDFYPHDFEVDTEGKRFTWQGIPKLPWIDDSRLVAETRELKNELSEKEAIRNSLKADSLFVRSSSKLAEKFGSLYVDPNAPCKLDTRISDGIGGTISLCHEFVDKPCLDNDDNKEDRVLCVYYELPAGSNHIPRLLSGVSLPEKTIFQGDIMETVLWHECQKYFSRFERVQNQDKWRSENSSNTLRFFSNASGQHARSFSSNTSSQQHARKFSSNAPSFLHKGAGVGWGGRGRKIDTVKNERIPSHPHKRHNDAGSYHLTTTSDTTSQHIVDDFRQVRISESGPCPNSTGSFHSRPYNSGSMNQSKNAPNHQASQGWGASSSSSLCPQWRGGKSHQMRDQNRW* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00286 912 Gene3D - 133 326 - -
Lapu11g00286 912 Gene3D - 1 120 - -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 808 912 - -
Lapu11g00286 912 FunFam 5'-3' exoribonuclease 523 623 - -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 765 783 - -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 850 899 - -
Lapu11g00286 912 CDD PIN_XRN1-2-like 36 268 - -
Lapu11g00286 912 Pfam Xrn1 helical domain 283 720 IPR041412 -
Lapu11g00286 912 Coils Coil 410 430 - -
Lapu11g00286 912 Coils Coil 373 393 - -
Lapu11g00286 912 Pfam XRN 5'-3' exonuclease N-terminus 1 242 IPR004859 GO:0003676|GO:0004527
Lapu11g00286 912 Coils Coil 606 626 - -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 808 824 - -
Lapu11g00286 912 PANTHER 5'->3' EXORIBONUCLEASE 1 882 IPR027073 -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 765 787 - -
Lapu11g00286 912 MobiDBLite consensus disorder prediction 825 842 - -
Lapu11g00286 912 PIRSF Exonuclease_Xrn2 1 253 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lapu11g00286 912 PIRSF Exonuclease_Xrn2 377 911 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lapu11g00286 912 PIRSF Exonuclease_Xrn2 246 406 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lapu11g00286 912 Gene3D - 527 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00286 Lapu-Chr11 5938074 5945521 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00286 - - gsj:114379404 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00286 11 5938074 5945521 Lapu11g00286 11 5938074 5945521 ECH