Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00256 ATGTTGAACGGTATGATGGATCCCGATTTGATCAGAATCGCTCAGGAGCAGATGAGTCGCATGTCACCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCAGAGAGCATGAAGAACATGAGTTCTGAAGACTTCAAACTTGCTGCTGAGCAGTTAAAGCATACCCGTCCAGAAGAAATGGCTGAGATAGGTGAGAAGATGGCCAATGCGTCCCCTGATGAAGTGGCAGCGATGCGGTCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAGGAAAATTCAGTGAAGCTTTGAAGAAGTATATGCTTGCTAAAGAAAACATTAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCCCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAGTGCGTAAGAGAAGGTTCTGAGGCTCTAGCATATGACGCGAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCGACTGAATGACGCAGTTTCTGATCTGAGCAAGGCACTTGAAGTGTCCCCTGATGATGATACAGTTGCAGAGCTTTTACGGGACACCAAAGAAAAATTGACAATGGGAGGTGGTGAGCAATCATCTAGCAGACTAGTAATTGAAGAAATAACTGAAGAAGTTGAGGATGTGCCTCCTGGAATCTCTTCTCTGGAACAAACAGTGGTTCAACCAAAAAAATCCGGTGACACCTCTAAGAGTAGCAGTACAGCTAACCATGGAAATCCAAAATCAAATGCAGACAGTTTAGACGCATTGAGAAAAGATCCTGAAGCTGTCAGGTCATTCCAGAACTTCATTTCAAACACCAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCCCCAGATATGATCAAAACTACCTCTGATATGATTGGTAAGATGTCTCCTGATGAACTGCAAAAAATGCTTGACGTGGCTTCTGCATTTCAAGGGGACAACCAATCTTTTAGAGGAGGTCCCCCTGATTCTTCTTTCAACCCGGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGACCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAGGGGAAAGAATCTATACCATCAGCAGCAGCAGTAGATGAGATCCAAAGAAATTTTTCTCGGTCGAACTTCCCATCATCAAGTACTAACGAAACTACTACTTTTGGGGAATCGAGTTCTTCTCATAATGTGTTTTCAAATATGAGAAGTGCTTCTCAGTCAAACTTTCCTTCCTCCAGTACCAATGTACAAGAACAGATGAGAAATCAGATGAAAGATCCAGCTATGCGGCAGATGTTCGCATCCGTGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAGCAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAAGGCTCGGGATGCCATGTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCAAGAAAGGCAAAGAACTGGCTGCTAGGGAAGTCTGGCATGGTCTTTGCAATATGCATGCTCATTTTGGCTGTCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1758 0.4374 MLNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQGKFSEALKKYMLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECVREGSEALAYDAKNLKALYRRGQAYKELGRLNDAVSDLSKALEVSPDDDTVAELLRDTKEKLTMGGGEQSSSRLVIEEITEEVEDVPPGISSLEQTVVQPKKSGDTSKSSSTANHGNPKSNADSLDALRKDPEAVRSFQNFISNTNPATLASLNAGQFKDVSPDMIKTTSDMIGKMSPDELQKMLDVASAFQGDNQSFRGGPPDSSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDEIQRNFSRSNFPSSSTNETTTFGESSSSHNVFSNMRSASQSNFPSSSTNVQEQMRNQMKDPAMRQMFASVIKNMSPEMMANMGEQFGVKLSPEEAAKARDAMSSMSPESLDKMMLWADRIQRGVESARKAKNWLLGKSGMVFAICMLILAVILHRLGFIGG* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00256 585 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Lapu11g00256 585 MobiDBLite consensus disorder prediction 257 286 - -
Lapu11g00256 585 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 360 - -
Lapu11g00256 585 SMART tpr_5 146 179 IPR019734 GO:0005515
Lapu11g00256 585 SMART tpr_5 103 136 IPR019734 GO:0005515
Lapu11g00256 585 SMART tpr_5 180 213 IPR019734 GO:0005515
Lapu11g00256 585 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Lapu11g00256 585 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Lapu11g00256 585 MobiDBLite consensus disorder prediction 433 471 - -
Lapu11g00256 585 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Lapu11g00256 585 MobiDBLite consensus disorder prediction 249 290 - -
Lapu11g00256 585 SUPERFAMILY TPR-like 96 225 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00256 Lapu-Chr11 5508111 5513709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00256 93 227 Calmodulin-binding Proteins AT5G48570 34.752 3.49e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00256 - - gmx:100800315 977.237