Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00238 ATGGCTAAGAGCTCATTCAAGATGGAACACCCGCTCGAAAGGAGACAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGACAGAATTCCAGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTGGGCCAGTTTGTGTATGTGGTGCGGAAAAGAATCAAGCTGAGTCCCGAGAAGGCCATCTTCATTTTTGTGAAGAACATCTTACCACCAACTGCGGCAATGATGTCTGCAATATACGAGGAAAACAAGGATGAAGATGGATTCCTATATATGACTTACAGTGGTGAGAACACATTTGGGCTGGTGTTCTGA 363 0.4353 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLVF* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00238 120 CDD Ubl_ATG8 12 114 - -
Lapu11g00238 120 FunFam Autophagy-related protein 1 117 - -
Lapu11g00238 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Lapu11g00238 120 Gene3D - 1 118 - -
Lapu11g00238 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Lapu11g00238 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00238 Lapu-Chr11 5320202 5322960 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00238 K08341 - gmx:100301895 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00238 11 5320202 5322960 Lapu11g00238 11 5320202 5322960 ECH