Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00236 ATGAACAACGCTCACAGGATGCGCGTGGCATTTACCGTTGTCACAGTAGCCGTCGCAGCTGCTATCGTATCCGTCTTCTTCGCCGTTAGAAGGCGCAAGCAGCACGAATCCTCTTCGAGTTCGTGCTATTTGCATTCCGAACAGAAACCACAGAGTGCGTTCAAGCGCGTATTATCGGATAATTCCTACTCTCCATTCAAGCACCTCCGCAACGACGAGAATGCTTCGAATTCTCATCCATTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCAGCCTGAAATTGAATTTGGACCTGAGATCGTGGACTTGGAAATGAAGGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAAGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACACGGGAGAAGGATTATTTGGTTGACACAATTGCCCTCCATGATTTTATGGGCATTCTTCGACCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGCGCTGACAATGATATAGTCTGGCTACAAAGGGACTTCCACATATACGTTGTTAACCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGAGAAGATTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACAGATGCACACTTTCTGTTGTATATTGCAAATTGTCTGATCAATGAACTCAAACAACTGGACGACGCAAACTCTTGTTCCAGTGACAAATCCCATTTTGTTCTCGAAGCTTGTCGGCGTTCAAACACAATTTGTTTACAACTTTTCACGAAGGAGATTGAAGCATATACTGGAGAATCTTCTGCATTATCGCTATTCTCCCGTCAAGTGAGCAGTCATGGTTGCCTGTCTATTTCAAATGAAACCCAGAATATTGTGAGGCAACTATGCGCATGGAGAGATCTGACGGCTCGTATTCATGATGAAAGCTTAAAATATGTACTCTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCATTCTGAAATTCACAAGACCATAGCCAAGGCTGACATCAATATGGAAATGGGTGTGAACTCTTTCATCTTTTCCCCTTCTCCTGTTGTTTGTAGTCACCTGAGTGATATTTATCATATGCTTGCAAACAAGTTGGTTAATGATGATGATATTTATTCAGTGATTCTTCAGAAGTGTATAGGTCAAAATGGGAGTTGTCCACTTTCTATATTTAATTATGCTTTGTTGGTAAACAGTAACCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAAAATCCTAAACAATATTCTCGGAAGGCTTCTCGAGATTTATTTGTTCAAAAGTTCTCTTGTAAATCTCCTGTCTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGATGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGACGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGATAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGACATTCTCCTACTTTGTGTGGATTGCCATGAGGTTGCACATGCTGCCGCAGAAAAGTATAAGAGGAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCGGAGGGTAGTTCATCCCGGTCAAAATACTGAAAAGCAAATTGAAGAGAGTGGTGTATCTCCATTACAGTTAAGAACAGCTGCTATGGCGCTTCTACGCCATGGACCAAGAATGCCTCTCAATCGCCGAGAAGAACTGACGGAGATTATAAAGAGATATTACGGAGGAAGGGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAGTACTGCTACAGTGCCAGAACAGAATAATCATGTTGGTTGCTCACCCAGAATGAGTGATGTGGATGACTTAAAAGTTGATGCTCATGATGGCTCATATGCAAATGAAGTAGATACAGAACTTTTTACGAGAAAAGATGATTTCAGAAACTCCACTTCAGCTTCTAATATTACAGTTAATGGACCTGGCTCTGCAACTTTGAATAAAAATGCAATTACAGTTGAAACTGGAGAGTGCAATGAAGGCAGTGACTCTACTGTAAATGATGGTAACAGCTGTCTGAGCAGAAGGCAAGCAAATGGACTTAGTGACTTGTCCTGTTCTCCCAATGATGAAAAATCTATACATATCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAGAGGTGGAGACAAGTATTTGTGGACGCTGTAAAACCACGGTTTCTTCCTGGTGGTTGGGATGTAAAACACAGCGGAAGAAGGGACTTCGGGGAGTTCAGTGTGTACAAACCTGACAAGAGAGCAGCTTCTTCTACTGGAGAGTAA 2787 0.4162 MNNAHRMRVAFTVVTVAVAAAIVSVFFAVRRRKQHESSSSSCYLHSEQKPQSAFKRVLSDNSYSPFKHLRNDENASNSHPFEAEITALLKTPQPEIEFGPEIVDLEMKDSYVWVHTETQLKELVDVLSEERFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDTIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDDANSCSSDKSHFVLEACRRSNTICLQLFTKEIEAYTGESSALSLFSRQVSSHGCLSISNETQNIVRQLCAWRDLTARIHDESLKYVLSDQAIVALASQPSASHSEIHKTIAKADINMEMGVNSFIFSPSPVVCSHLSDIYHMLANKLVNDDDIYSVILQKCIGQNGSCPLSIFNYALLVNSNLRPNLAHKQLGPKNPKQYSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVDEEPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDILLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLRRVVHPGQNTEKQIEESGVSPLQLRTAAMALLRHGPRMPLNRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGSTATVPEQNNHVGCSPRMSDVDDLKVDAHDGSYANEVDTELFTRKDDFRNSTSASNITVNGPGSATLNKNAITVETGECNEGSDSTVNDGNSCLSRRQANGLSDLSCSPNDEKSIHIEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIREFCQRWRQVFVDAVKPRFLPGGWDVKHSGRRDFGEFSVYKPDKRAASSTGE* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00236 928 SMART 35exoneu6 111 279 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lapu11g00236 928 CDD Rrp6p_like_exo 107 285 - -
Lapu11g00236 928 Gene3D HRDC domain 331 434 IPR044876 -
Lapu11g00236 928 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 36 920 IPR045092 GO:0000175|GO:0000467
Lapu11g00236 928 MobiDBLite consensus disorder prediction 724 744 - -
Lapu11g00236 928 SUPERFAMILY HRDC-like 338 393 IPR010997 GO:0000166|GO:0044237
Lapu11g00236 928 MobiDBLite consensus disorder prediction 724 743 - -
Lapu11g00236 928 Pfam 3'-5' exonuclease 111 278 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lapu11g00236 928 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 48 316 - -
Lapu11g00236 928 Pfam HRDC domain 345 387 IPR002121 GO:0003676
Lapu11g00236 928 Gene3D - 40 316 IPR036397 GO:0003676
Lapu11g00236 928 SUPERFAMILY Ribonuclease H-like 49 290 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00236 Lapu-Chr11 5281505 5289529 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00236 K12951 - gmx:100791485 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00236 11 5281505 5289529 Lapu11g00236 11 5281505 5289529 ECH