Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00235 ATGGCAGAACCTAAGGTTAAGTACGATCGCCAGCTCAGAATATGGGGTGACCAAGGACAAGCAGCCCTTGAGAAATCTAGCATTTGCTTACTTAACTGTGGTCCAACCGGTTCGGAAACACTTAAGAATCTTGTTCTTGGTGGGGTTGGAAGCATCACTGTAGTTGATGGATCTAAAGTTGAAGAGGGTGACCTTGGAAACAATTTTTTGGTGGATGAGTCAAGCCTTGGAAAGTCAAAGGCAAAATGTGTATGCTCATTTCTTCAAGAGCTGAATGATGCAGTTAAAGCTAAGTTTGTAGAAGAGTCTCCTGAAACATTGATTGAGACAAATCCATCATTCTTTTCTCAATTTACTTTGGTTGTTGCCACTCAGCTCGTGGAATATTCAATGATTAAGCTTGACCGAATCTGCAGGGAGGCAAATGTTATTTTGATCTTTGCTCGCTCCTATGGCCTTACAGGTTTTGTTCGAGTTAGTGTGAAGGAACATGATGTGATTGAGTCAAAGCCTGAACATTTCCTGGATGATCTCCGGTTAAATAACCCTTGGCCTGAACTCAAGAGATTTGCAGATGACATTGATTTGAATGTGCAAGATCCTGTGGTACATAAGCACATACCATATGTTGTCATTCTTGTCAAGATGGCCGATGAGTGGGCCAAAAGCCATGGTGGTAGGCTTCCATCGACCAGAGAAGAAAAGAAGGAGTTCAAGGAGCTTCTTAAGGCTGGGATGGTTGCACAAGATGAAGATAATTATAGAGAAGCTATTGATTCATCATTCAAAGTATTTGCTGCCCGAGGAATAAGTACGGAGTTGCAACAGATACTAAATGATAGTTCTGCTGAAGTGGATTCTAATTCATCAGATTTTTGGGTATTGGTGGCAGCTCTGAAGGATTTCATTACAAATGAAGGTGGCGGGGAGGCACCTCTTGAAGGATCTATACCTGATATGACATCTTCTACCGAGCAATATGTGAATTTGCAGAAAATCTATCATGCTAAAGCCGAGGCTGATTTTGTTGTAATAGAACATCTAGTGAGAAGTACATTGAAGAAGATTGGTAGAGATTCAAATAGCATTCCAAGGTCAACAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTTTGCAGGTACCGTCTAATTGAAGACGAGTTTAATTCTCCAAACCTACCCGATTTGCAGAAGTACTTAACTGATGAGGATTCCAGCATTGCTATGGGAATTTATATTTTGCTTCGTGCTGCTGACCGGTTTGCTGCCAATTACAACAGTTTTCCCGGACAATTTGACAGTGCAATGGATGAAGATATACCTCGATTAAAGAGCACTGCAATTGGCTTACTTAATGACTTGGGATGCAATGGTGCCACTTTGGCTGAGGACCTTATCAACGAGATGTGTCGCTTTGGTGCTGCAGAGCTTCATGCTGTTGCTGCTTTGGTTGGAGGAATTGCATCACAAGAAGTGATCAAGCTCATAACAAAGCAGTTCGTACCGATGTCCGGAACCTACATATTCAACGGCATTGACCACAAATCACAGCTGTTGTCACTATAA 1572 0.4154 MAEPKVKYDRQLRIWGDQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEEGDLGNNFLVDESSLGKSKAKCVCSFLQELNDAVKAKFVEESPETLIETNPSFFSQFTLVVATQLVEYSMIKLDRICREANVILIFARSYGLTGFVRVSVKEHDVIESKPEHFLDDLRLNNPWPELKRFADDIDLNVQDPVVHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDEDNYREAIDSSFKVFAARGISTELQQILNDSSAEVDSNSSDFWVLVAALKDFITNEGGGEAPLEGSIPDMTSSTEQYVNLQKIYHAKAEADFVVIEHLVRSTLKKIGRDSNSIPRSTIKSFCKNARKLKVCRYRLIEDEFNSPNLPDLQKYLTDEDSSIAMGIYILLRAADRFAANYNSFPGQFDSAMDEDIPRLKSTAIGLLNDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIASQEVIKLITKQFVPMSGTYIFNGIDHKSQLLSL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00235 523 Gene3D - 2 277 - -
Lapu11g00235 523 CDD APPBP1_RUB 7 521 - -
Lapu11g00235 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 519 IPR035985 GO:0008641
Lapu11g00235 523 Gene3D - 351 523 - -
Lapu11g00235 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 1 274 - -
Lapu11g00235 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 361 523 - -
Lapu11g00235 523 Pfam ThiF family 8 501 IPR000594 -
Lapu11g00235 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
Lapu11g00235 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 505 IPR045886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00235 Lapu-Chr11 5273609 5281247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00235 7 78 EF-hand Containing Proteins AT2G30110 33.766 2.03e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00235 K04532 - gmx:100793799 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00235 11 5273609 5281247 Lapu11g00235 11 5273609 5281247 ECH