Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00228 ATGCCCCAGTTTGGTCGGAGACTCAACAAATCCTCCACCTTAAGGCGACGCTTTCACCACCGCGTTTCCCTGCTACGGAGGTGCATCCTCCGCGTCCTCCACCGCGTCCTCCTCTGCTCCGGGAGAAAGACCAACACCACCTACAGCATGCTGCCACCAGCATTACCCTCTCCACCGCCGCCGCCGGGATCCTCCGGTGAGCTTGGTCGTGAGGAGATGGATGTCGCGCCGCCGGCACTGTTTCAAACCCATGACTTGGATTCTGATTTGGTCTCCTTGAAGATCAGCTTGTTGGGAGATTGCCAAATTGGAAAAACCAGCTTTTTGGTGAAATATGTTGGGGATGAAAAGGAGAAGCAAGGGAGCCAGATGGAAGGGTTAAAACAGATGGACAAAACTTTAGTTGTTAAAGGGGCTCGTATCTCGTACTGTATCTGGGAAGTACAAGGCGATGGAAAAACAGAAGATCAAATTCCGATGGCTTGTATGGATTCTGTGGCAATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAGTGTCCTTGGATGGTACAAAGAAGCCAGGAAATGGAATCAGACGGCAATTCCAGTGTTGATAGGAACCAAGTTTGATGATTTTATCCAGCTCCCTATTGATATGCAATGGACCATTGCTAATGAGGCAAGAACATATGCAAAGGCCCTGAATGCCGCCTTGTTCTTTTCCAGTGCAACCTACAACATCAACGTGAACAAGATCTTCAAGTTCATCACTGCTAAACTCTTCGACCTACCATGGACAGTAGAAAGGAATTTGAATGTTGGGGAGCCCATCATTGACTTCTAA 834 0.4772 MPQFGRRLNKSSTLRRRFHHRVSLLRRCILRVLHRVLLCSGRKTNTTYSMLPPALPSPPPPPGSSGELGREEMDVAPPALFQTHDLDSDLVSLKISLLGDCQIGKTSFLVKYVGDEKEKQGSQMEGLKQMDKTLVVKGARISYCIWEVQGDGKTEDQIPMACMDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDMQWTIANEARTYAKALNAALFFSSATYNINVNKIFKFITAKLFDLPWTVERNLNVGEPIIDF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00228 277 PANTHER - 90 267 - -
Lapu11g00228 277 MobiDBLite consensus disorder prediction 48 70 - -
Lapu11g00228 277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 270 IPR027417 -
Lapu11g00228 277 SMART rab_sub_5 93 260 - -
Lapu11g00228 277 FunFam Septum-promoting GTP-binding protein 1 83 267 - -
Lapu11g00228 277 Pfam Ras family 94 257 IPR001806 GO:0003924|GO:0005525
Lapu11g00228 277 PIRSF GTPase_Tem1 3 277 IPR017231 -
Lapu11g00228 277 Gene3D - 85 268 IPR027417 -
Lapu11g00228 277 ProSiteProfiles small GTPase Rab1 family profile. 87 277 - -
Lapu11g00228 277 SMART rho_sub_3 95 259 IPR001806 GO:0003924|GO:0005525
Lapu11g00228 277 PRINTS Transforming protein P21 ras signature 93 114 - -
Lapu11g00228 277 PRINTS Transforming protein P21 ras signature 195 208 - -
Lapu11g00228 277 PRINTS Transforming protein P21 ras signature 235 257 - -
Lapu11g00228 277 PRINTS Transforming protein P21 ras signature 134 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00228 Lapu-Chr11 5169151 5171951 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00228 K07976 - gmx:100780638 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00228 11 5169151 5171951 Lapu11g00228 11 5169151 5171951 ECH