Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00203 ATGGAAACAAGATCAGCAAAACGCAAGAAAATGGCTCAAATTGTAGAGAACGATGCCAAAGTAGCCATGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCATCATATTCTTTTCCTACTTCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCCAAAAGATGGAAACATTTATGGTGCACTTTTCCCGACCTGGATTTCAGAACCCTTAACCCGTTTCAAATCTCTTCCAAAAATGTTAAATTTTTTGAGTTTGAAAAGCCAAGGCAACCTTTAGATTCGACACGAATGGATTTCATCACACAAGTTCTCTCCGTTCGTGACAAACACTCAGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAATGGTTTGATTCGTAGGGCTATTAGGCATAACGTTAGAGAGCTTGATATTGAAGTGTCAACAGTGTGTACAGATGATTACTTCAACTTTCCTAGATGTGTTATTGGGAGTGAATCTTTAAGGGTTTTGAAACTAAGATCAGGTTTTCGTTTGCCTCCATCATCAGTTATGAGGCATGGCTTTCAATCTCTTAAAACCTTGTCTCTTTCCCTAGTTATTTTGAACAACCAACCTTCTCTCCCTGATTTGTTCTCTGAATCATCCTTTCCTCTTCTTCAAACTCTCAACCTTGATGCATGTTTCGGGTTAAAGTATCTTCATGTTGGATGTAGGGCTCTTGAAGATTTGAACTTGGAGAAATGTTATGAGCTAGAGGGTTTGGATATCTCATGTGCAAAACTTGAGAGAATGAGATTGGTGAAATGTTTTGATGCCTATAGTGACAAGAGTTGGGTAAAAATCAATGCACCCAAGCTTGAGCACTTGTGTTGGCAGCATAATGCAGTCACTGACATGGCTATTTTTGAGCCTTCAAATTTCTTGCATGAGGTCACAGTTGGTATCTATATATTGACAAAAGATAATAGTCGGAGTAAGCTTCAAAGTGCTGTTGATTTATTATCTGGACTCTCTCGTGTCCATTCCTTGTCTCTTGAAAGGCAAACTATTGAGATTCTGTCAAATAATCACCTCCTTTTTCAGCCCTTTTATGATCTTAAATATTTAGAACTGCAAACTGGTTTCAACAAAAGCAATGTTCCGGGATTGACATGTCTATTCAAGAGCTCTCCCACTCTCAACACTTTGATTCTGAAGATCATTCACGAATACAGGATTGAAAGAAAAGAATGGAATAGAGACTTGTGGGACGTGACTATCAGTGAGGAAGAGCAGTATTGGGAGTCTCAGATCCGAACTCTCGAGTCTTTCCTACAACACTTGAAAGTGGTAAAAATTCACGGATTTCTTGATTATGAGAATGAAGTTGCACTTGCAAAGTTTCTCCTTAAGCATGGAAAAGCCTTGGAAGAAATGGTTTTACACACAGGACATTGCAATGCAAGAGACACTCTTAGGCGACAAAAAATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCATCTAATGCAAAAGTGGCCTTTCAGTAG 1533 0.3894 METRSAKRKKMAQIVENDAKVAMDRISDLPDAVLHHILFLLPIKCVAQMSILSKRWKHLWCTFPDLDFRTLNPFQISSKNVKFFEFEKPRQPLDSTRMDFITQVLSVRDKHSDIRVLCFRARLSFSRLNGLIRRAIRHNVRELDIEVSTVCTDDYFNFPRCVIGSESLRVLKLRSGFRLPPSSVMRHGFQSLKTLSLSLVILNNQPSLPDLFSESSFPLLQTLNLDACFGLKYLHVGCRALEDLNLEKCYELEGLDISCAKLERMRLVKCFDAYSDKSWVKINAPKLEHLCWQHNAVTDMAIFEPSNFLHEVTVGIYILTKDNSRSKLQSAVDLLSGLSRVHSLSLERQTIEILSNNHLLFQPFYDLKYLELQTGFNKSNVPGLTCLFKSSPTLNTLILKIIHEYRIERKEWNRDLWDVTISEEEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMVLHTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00203 510 Pfam FBD 436 475 IPR006566 -
Lapu11g00203 510 SUPERFAMILY F-box domain 23 68 IPR036047 GO:0005515
Lapu11g00203 510 Gene3D - 9 66 - -
Lapu11g00203 510 Pfam F-box domain 26 62 IPR001810 GO:0005515
Lapu11g00203 510 SUPERFAMILY RNI-like 123 418 - -
Lapu11g00203 510 SMART 9598neu4hmm 436 510 IPR006566 -
Lapu11g00203 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Lapu11g00203 510 Gene3D Ribonuclease Inhibitor 93 486 IPR032675 -
Lapu11g00203 510 CDD F-box_AtFBL13-like 26 60 - -
Lapu11g00203 510 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 23 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00203 Lapu-Chr11 4783040 4785693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00203 21 479 EF-hand Containing Proteins AT5G41840 23.938 7.20e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00203 - - gmx:100819136 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00203 11 4783040 4785693 Lapu11g00203 11 4783040 4785693 ECH