LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu11g00197	ATGTTTAGATTTTCTTGTTTCCATGCTAATGTCCAAGGCAATAAGGCAAAGGTCAGTATAAGATGTATGAATTTCTTAAAAACAGTTCAACCTTCTACTGAAGCAATGTTGAAGGCTTTGCAAGATGTTGCCCAAAATCAAGGCCGTAAAGATTCATCTAATCCTCCAAATGCATATTCACCCCTTTTGAAAGAACAAGCAGACAAGCAGATAGATGTTTCTGGGAATCATATTAGCAATTGGGATTCAGTTGAGCGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAATGACAGTCAAGTTAACCAAACTCCACGTCTTAAGAAGAGTCAGTCTCTTCAGAGTGGGCTTGACCAAGGCATAAGGGATGGTGATGAAGATCTGGGGCTGTCGTATGATGGTGCCAAAAGCCACATTGAGTCAACCATGTCAACTTCCAAAAAGTATCATAATGGAAACCCTGTTGATCAGTATGGAAGTAATCCAAACGTTGAGTTTCCTGCCAGTTCAGGTTTTGCAAATGATGGCTCACTTTTTTCAATTGGAGACCCTATACCTTCAGATAAAGATGCCCCTGAAATTTCTGACACTCCTTTATCTGGTGAATATGTTGGTGACATTCCTGACCAGACTTCTGTTCCTGGCAGCGTATCTCTTAGGAAGTCATATTCTTTACCCAATATCAGAGCTTCTATACTTTCTGCTGAAAAAGATGCTTTTAAACTTGCATTGTCAAGATCTTCCGATGATCTTCATGCTTTACGCATGAAGCAGAAAGAGGACTTCGTCAACGATTTTGATGATCAAATAAGGGGAGATCAAGAAAGAGAGAATGACATGGGAAAAACTGAAGATGGTCATATGGACAACCCCTTTGATGATTGTTTCGATTCTTATCTGCTTTCGGGTTCAGCAAAAGACTGGGTAATGCCAATTTCGTATGATACAAGTGATGTCAAAAGCCTTCAAGGAGATTCCTCAGTTGAATTTCCTAACAAGGATTTTAAGATTAAGCGCCTTGAGGATTGGGTTATTGGTCTGCAGCATTGTGGACCACCTCTAGAGGAAACAAATGAAGAATTGCCTGAAGTTATTAAGCCTTTAGCTGATGTCAACACAGTAAATGGTGCAACTGCTTCCATTGTGGATCATAAGGTCGCTCCAGGAATGGAAACAGCTAAAAGATATATATCTTCTCTGGGGGCTAATGCCACTACCGCTCAGCTGGCTAATCATGGATTGGTTGTGATCCCCTTTTTGAGTGCATTTGTAAGTTTGAAAGTGCTCAATTTGTCTGGAAATGCCATTGTGAGGATAACTGCTGGTGCTCTTCCTCGTGGACTTCACGCGCTGAATTTGTCTAGAAACAAGATCTCCACCATTGAAGGATTACGTGAACTTACACGACTTCGTGTCCTCGATCTCAGTTACAACCGAATATTAAGAATTGGACATGGCCTTGCATCTTGCTCATCTCTGAAAGAGCTGTACCTGGCTGGAAACAAGATCAGCGAAGTAGAGGGTCTGCACCGTCTCTTGAAGCTAAGCATCCTGGATCTCCGTTTTAACAAGATTTCAACAGCCAAATGTCTGGGCCAACTTGCAGCCAACTATAACTCTTTGCAAGCTATCAACTTGGATGGGAACCCTGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAGGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATCAAAGTGAGCACCTTGAAGGATGGAGCAGAACGGTCTGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGGTCGGATCGCAAGAGCACAAGGAAGGGTAGCCAAGGCGTTGTTGCCTCGAGGAGGTCATCAGCCACTTCCTCTCATGTTCGCAGAAATGTGGATTCACCAAAAGTATCCAGAGGCAAGCAAGTTCTGCTGCCACCATCTAGAACCAAAGTACCAACCCACACTCGCTATCAGTTTGAGGCTCCCACCAAAGTATTGAACTTGACATCAGAGCGTGCAATGCGCAAGAGTCGCAGCGAGGGAAATTTTGGAGCTCTGTGA	2088	0.4315	MFRFSCFHANVQGNKAKVSIRCMNFLKTVQPSTEAMLKALQDVAQNQGRKDSSNPPNAYSPLLKEQADKQIDVSGNHISNWDSVERSCRSEDLNSKFSFENDSQVNQTPRLKKSQSLQSGLDQGIRDGDEDLGLSYDGAKSHIESTMSTSKKYHNGNPVDQYGSNPNVEFPASSGFANDGSLFSIGDPIPSDKDAPEISDTPLSGEYVGDIPDQTSVPGSVSLRKSYSLPNIRASILSAEKDAFKLALSRSSDDLHALRMKQKEDFVNDFDDQIRGDQERENDMGKTEDGHMDNPFDDCFDSYLLSGSAKDWVMPISYDTSDVKSLQGDSSVEFPNKDFKIKRLEDWVIGLQHCGPPLEETNEELPEVIKPLADVNTVNGATASIVDHKVAPGMETAKRYISSLGANATTAQLANHGLVVIPFLSAFVSLKVLNLSGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPIKVSTLKDGAERSVRLGMNSHQFDRSLRSDRKSTRKGSQGVVASRRSSATSSHVRRNVDSPKVSRGKQVLLPPSRTKVPTHTRYQFEAPTKVLNLTSERAMRKSRSEGNFGAL*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu11g00197	695	SMART	LRR_sd22_2	516	540	-	-
	Lapu11g00197	695	SMART	LRR_sd22_2	449	470	-	-
	Lapu11g00197	695	SMART	LRR_sd22_2	494	515	-	-
	Lapu11g00197	695	SMART	LRR_sd22_2	471	493	-	-
	Lapu11g00197	695	ProSiteProfiles	Leucine-rich repeat profile.	496	517	IPR001611	GO:0005515
	Lapu11g00197	695	MobiDBLite	consensus disorder prediction	599	664	-	-
	Lapu11g00197	695	MobiDBLite	consensus disorder prediction	99	133	-	-
	Lapu11g00197	695	Gene3D	Ribonuclease Inhibitor	382	567	IPR032675	-
	Lapu11g00197	695	FunFam	Protein phosphatase 1 regulatory subunit pprA	388	569	-	-
	Lapu11g00197	695	MobiDBLite	consensus disorder prediction	618	639	-	-
	Lapu11g00197	695	SUPERFAMILY	Outer arm dynein light chain 1	419	584	-	-
	Lapu11g00197	695	ProSiteProfiles	Leucine-rich repeat profile.	473	495	IPR001611	GO:0005515
	Lapu11g00197	695	ProSiteProfiles	Leucine-rich repeat profile.	451	472	IPR001611	GO:0005515
	Lapu11g00197	695	PANTHER	NISCHARIN RELATED	243	662	-	-
	Lapu11g00197	695	MobiDBLite	consensus disorder prediction	99	122	-	-
	Lapu11g00197	695	Pfam	Leucine rich repeat	429	484	IPR001611	GO:0005515
	Lapu11g00197	695	SMART	LRR_typ_2	427	450	IPR003591	-
	Lapu11g00197	695	SMART	LRR_typ_2	471	494	IPR003591	-
	Lapu11g00197	695	SMART	LRR_typ_2	516	538	IPR003591	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu11g00197	Lapu-Chr11	4695730	4699967	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu11g00197	-		-	gmx:100790061	1117.45

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu11g00197	11	4695730	4699967	Lapu11g00197	11	4695730	4699967	ECH