Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01528 ATGTTGCAACCCTTCACTACTTTCTTTACCTTTCTTCACAGGAATACCAAATCCTTCCTCAACCAACAAAGATTCATGATGAGTGCATGCTATAAAGGAAAACGACCCAAGAGAAAATTCTCTTCAGCTTCTGACTTGTCAACCTCTTCTTTCCTTCACATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGATGATTGACTCTAATGGGGATGGGAAGATCTCAACCACTGAGCTGAGTGAAGTGCTTGCATGCCTTGGATACAACAAGTGCACTGCTGCTAAGGAAGCTGAAGGCATGGTGAGGGTGTTGGATTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAATGGCATGGAAAAAGAAGAGGAGGAGAAAGAAGAAGAAGCAGAAGAAGAAGAAGAGAAGATTGGAAGTGGCATGAGGCATGATGATGGTTACCTCATGGATGCTTTTCTTGTCTTTGATACTGACAAGAATGGCCTCATTTCAGCCAAGGAACTGCAGAGAGTTCTCATCAATCTAGGGTGTGAAAACTGTAGCCTCAGAGAGTGCAAACGCATGATCAAAGGGGTTGATCAGAATGGAGATGGGTTTGTAGATTTTGAAGAATTTCGATCCATGATGCAAAGTGGACTTGCAAGTTAG 666 0.4294 MLQPFTTFFTFLHRNTKSFLNQQRFMMSACYKGKRPKRKFSSASDLSTSSFLHMELSTQFHQVFKMIDSNGDGKISTTELSEVLACLGYNKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGMEKEEEEKEEEAEEEEEKIGSGMRHDDGYLMDAFLVFDTDKNGLISAKELQRVLINLGCENCSLRECKRMIKGVDQNGDGFVDFEEFRSMMQSGLAS* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01528 221 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Lapu10g01528 221 ProSiteProfiles EF-hand calcium-binding domain profile. 186 221 IPR002048 GO:0005509
Lapu10g01528 221 Gene3D - 149 219 - -
Lapu10g01528 221 Gene3D - 5 148 - -
Lapu10g01528 221 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Lapu10g01528 221 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Lapu10g01528 221 SUPERFAMILY EF-hand 57 215 IPR011992 -
Lapu10g01528 221 FunFam Calmodulin-2 A 50 150 - -
Lapu10g01528 221 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Lapu10g01528 221 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Lapu10g01528 221 MobiDBLite consensus disorder prediction 126 146 - -
Lapu10g01528 221 Coils Coil 115 145 - -
Lapu10g01528 221 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Lapu10g01528 221 CDD EFh 153 216 IPR002048 GO:0005509
Lapu10g01528 221 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 153 216 - -
Lapu10g01528 221 CDD EFh 59 122 IPR002048 GO:0005509
Lapu10g01528 221 ProSitePatterns EF-hand calcium-binding domain. 199 211 IPR018247 -
Lapu10g01528 221 FunFam calmodulin-like protein 3 151 219 - -
Lapu10g01528 221 SMART efh_1 153 181 IPR002048 GO:0005509
Lapu10g01528 221 SMART efh_1 59 87 IPR002048 GO:0005509
Lapu10g01528 221 SMART efh_1 190 218 IPR002048 GO:0005509
Lapu10g01528 221 SMART efh_1 97 125 IPR002048 GO:0005509
Lapu10g01528 221 Pfam EF-hand domain pair 154 216 IPR002048 GO:0005509
Lapu10g01528 221 Pfam EF-hand domain pair 59 122 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01528 Lapu-Chr10 26370298 26370963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01528 60 215 EF-hand Containing Proteins AT1G66400 40.385 1.71e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01528 - - gmx:100779339 357.836