Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01400 ATGGATTATTCGGGCTACAACTACCAGCAGCAACCGCAACAACATTCCTATGGCTATGACCCTTCTCAGATCCAAATCCAACCCTACGATCAATCCTATGCCTATCAACAATACTACGGATACAATCCCCAATACGCCTATTTTCCCAACACACATCAAGCTCAGTTTCAATTCCAATCCGATTCCGCTCCGCTTCATCCTCCTGGCGTCAACCCCACCGTTCCGGAACCCGCCCCGACTGGGCCATCTCAATACAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGAGGGGCTGGCCGTGGTCGGGGCCACGGTAAGGGTCATGGAGTAGGGGGTGGTAGACACATACCATCTCATTCTTCTGGATCCGCTATATCTCTTGGGGCTGGTGCACCTGTTGCTGCTGGGACTACTTCAGCTGTAGAACCTTCATCATCAGTATCTGTGCCGACACAATTACCTAAACCAGCTCGAATTCAACCACCAGCACCTCGTAAGGTGTGTTGCGAAATTTGTAAGGTTGAGTGCAATACTCCAGAAATCTTGGAGCAACACAAGAATGGGAAGAAACATCAGAAGAATATGAGGGTGCATGAAGAATTGCAAAGGCGCAATGCTCTAAATGGACAACAGAGTGGGCAAATTCCTACTTCTCAATTGAATTTAACAGATCAACCTAAGCAAGTTCTGGAGTCTGAGAAAAGTGGATGCCCAGAAGACAATATGGGCTCTGGGGTTATAGTTAATAATCACAAGGAGGAAGCTCAGCTGCAGAATAATGTAGGAAACATTTCTGAAGTTCCGGCTGAAGTACCTGAGGCAAAAAACATGGATAATTCTGCCGGAAGAGGCCGAGGATTAAAGCGGAAGAAGAAAGGAGGAAAAGGGGGCAAATACATGAGAACCAATGATGGTTTAAAGCCAGTGGAATCTGCACAAACCATGTCTTTTAGATGTGAGTTGTGTGATGTTAAATGTGAGTCACAAGTTGTTTACCAGAGTCATATGACTGGGAAAAAGCACTTATCGAAACTAAGGCGTGCTCATGATCCCCAAGCTTCATCTGGAGTAGGCCAGCAGCAAGCTCTGTCAGGAGCACTCTTGGGGCTTCAAACCCTTTACCCACCTGACATCAATGCTCTGTCTAATGCAATTAATGCTCAAGTACAACAAGGTGATAATGATCCACAGGTACTTTTGGCTCAGCTCCTGATGACTGTATTATCTCAAGCACAAGTAACAGCAACAGCACAAGTGACAGGTCTGACGGCTGCTCAGATGCCTGCACCCATATCTATGGCTGGACCAAGTTATGAACCACAGTTGTTGCAGACACGAGTATCAGAAATCACAGCACATGCTAATTCGGAAAATCCTTCTGAGGAAACAAAAACTGAGCTGTTACCTGTCCCATTGGAGTCAAAAGCTCAGCCAGGTTCAAGTGTCGCCCAAGTTGAAGGTGGAGGTTCTGAAACTGAACAAGAGGTGTAA 1494 0.4665 MDYSGYNYQQQPQQHSYGYDPSQIQIQPYDQSYAYQQYYGYNPQYAYFPNTHQAQFQFQSDSAPLHPPGVNPTVPEPAPTGPSQYRGRGGRGGRPFRGAGRGRGHGKGHGVGGGRHIPSHSSGSAISLGAGAPVAAGTTSAVEPSSSVSVPTQLPKPARIQPPAPRKVCCEICKVECNTPEILEQHKNGKKHQKNMRVHEELQRRNALNGQQSGQIPTSQLNLTDQPKQVLESEKSGCPEDNMGSGVIVNNHKEEAQLQNNVGNISEVPAEVPEAKNMDNSAGRGRGLKRKKKGGKGGKYMRTNDGLKPVESAQTMSFRCELCDVKCESQVVYQSHMTGKKHLSKLRRAHDPQASSGVGQQQALSGALLGLQTLYPPDINALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQVTATAQVTGLTAAQMPAPISMAGPSYEPQLLQTRVSEITAHANSENPSEETKTELLPVPLESKAQPGSSVAQVEGGGSETEQEV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01400 497 MobiDBLite consensus disorder prediction 1 21 - -
Lapu10g01400 497 MobiDBLite consensus disorder prediction 60 163 - -
Lapu10g01400 497 SMART ZnF_U1_5 165 199 IPR003604 GO:0003676|GO:0008270
Lapu10g01400 497 SMART ZnF_U1_5 315 349 IPR003604 GO:0003676|GO:0008270
Lapu10g01400 497 SUPERFAMILY beta-beta-alpha zinc fingers 312 348 IPR036236 -
Lapu10g01400 497 SMART c2h2final6 168 192 IPR013087 -
Lapu10g01400 497 SMART c2h2final6 318 342 IPR013087 -
Lapu10g01400 497 PANTHER OS06G0651300 PROTEIN-RELATED 7 409 - -
Lapu10g01400 497 MobiDBLite consensus disorder prediction 276 306 - -
Lapu10g01400 497 SUPERFAMILY beta-beta-alpha zinc fingers 163 200 IPR036236 -
Lapu10g01400 497 Pfam Zinc-finger of C2H2 type 170 192 - -
Lapu10g01400 497 Pfam Zinc-finger of C2H2 type 318 342 - -
Lapu10g01400 497 MobiDBLite consensus disorder prediction 453 497 - -
Lapu10g01400 497 MobiDBLite consensus disorder prediction 139 154 - -
Lapu10g01400 497 Gene3D Classic Zinc Finger 153 201 - -
Lapu10g01400 497 Gene3D Classic Zinc Finger 299 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01400 Lapu-Chr10 21663611 21669349 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01400 - - gmx:100794880 645.58