Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01322 ATGGGTGCAGCTGAAGTAATGCCTGAGAACCCCCTTCAAGCAGTTCCTATACTTTCAAGAGAAAGCAGTTTTTCATCTTCACCTAGAAGGTTGGAGGGAAAGGTTGCTATCGTAACAGGGGGTGCGAGAGGGATTGGTGAAGCGACGGTGCGAGTGTTCGTGAAGAACGGTGCAAGGGTAGTGATAGCAGATGTTGAGGATGCACTTGGCACGATGTTGGCAGAGACCTTGGCCCCTTCAGCCACGTACGTGCACTGCGACGTTAGCGTGGAAGAAGAGGTTGAGAATTTGGTGAATTCCACAGTTTCTCGCTACGGTCAAGTGGACATAATGTTCAACAACGCAGGGGTGTTGGGGAACCAGTCCAAGAACAAAAGCATTCTGAACTTTGACCCTAGCGAGTTCGACCGTGTGATGCAAGTGAACGTGAAGGGAATGGCCTTGGGGATCAAGCACGCTGCAAGGGCCATGATTCCTAAGGGCATTGGGTGCATCATTTCCACTGCTAGTGTTGCTGGGATCATGGGGGGGCTTGGCCCACATGCTTACACTGCCTCAAAGCATGCCATTGTGGGGCTCACCAAGAACACTGCTTGTGAGTTGGGGAGGTATGGGATAAGGGTGAATTGTATTTCCCCCTTTGGGGTGGCCACCAACATGCTTGTGAATGCTTGGAGAAGTGGTGGTTGTGATGAGGAAGAGGGTGATGATGAGGGTATCAATTTTGGGTTGCCCTTTCAAGAGGAGGTGGAGAAAATGGAGGGCTTTGTGAGAGGGCTTGCCAACTTGAAAGGACCAACTCTAAGAGCCAAAGACATTGCTGAGGCTGCACTCTATCTTGCTAGTGATGAGTCCAAGTATGTTAGTGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCCTCAAGAAACTGCATTGGTTTGTAA 927 0.5005 MGAAEVMPENPLQAVPILSRESSFSSSPRRLEGKVAIVTGGARGIGEATVRVFVKNGARVVIADVEDALGTMLAETLAPSATYVHCDVSVEEEVENLVNSTVSRYGQVDIMFNNAGVLGNQSKNKSILNFDPSEFDRVMQVNVKGMALGIKHAARAMIPKGIGCIISTASVAGIMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATNMLVNAWRSGGCDEEEGDDEGINFGLPFQEEVEKMEGFVRGLANLKGPTLRAKDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01322 308 Pfam short chain dehydrogenase 34 223 IPR002347 -
Lapu10g01322 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Lapu10g01322 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Lapu10g01322 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Lapu10g01322 308 CDD secoisolariciresinol-DH_like_SDR_c 31 300 IPR045309 GO:0016616
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 263 283 IPR002347 -
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Lapu10g01322 308 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Lapu10g01322 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 300 IPR036291 -
Lapu10g01322 308 Pfam Enoyl-(Acyl carrier protein) reductase 251 300 - -
Lapu10g01322 308 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 27 303 - -
Lapu10g01322 308 FunFam Short-chain dehydrogenase reductase 21 304 - -
Lapu10g01322 308 Gene3D - 20 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01322 Lapu-Chr10 18488386 18489929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01322 28 301 Miscellaneous Gene Families AT4G05530 34.050 1.15e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01322 - - gmx:100790562 536.184