Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00905 ATGCAAAGTCTAATAATCATTTGTGTTTTGATTATTGCTTTAATTTCACCATGTATATGTCTTGGGTTCAATGTTGGCATAGAAGCATTCTATAATGTCATCAATTTTGGTGCTAAGGGAGATGGGAGAACGGATGATTCACAAGCATTTATAAGAGCATGGGAAAGCACTTGTGGGGCACAAGGGATGCCAACTCTGGTCATTCCTCCAAACTATGTTTTCCTTTTGTCACCATTAATGCTAAAGGGTCCTTGCCATGCCTCAAATATTCAAATTCAGATTGAAGGAAAAATAGTTGCAGCTGCAAAGGATGAATGGGTCATTAGTTTCAATGCATGCAATGGTCTTAGGGTTAGTTACTTGAGCATAGTTAACAGTCCAAGATCTCACATAACCGTGAATGATTGTGTTGATGCCACATTCTCTGCTATCACTATTCATTCTCCTGCTAATGCTCCCAACACTGATGGATTTGACGTCTCTGCTTCCAAAAATATCCTCATCACAGATTCAACTATAGCGTCTGGTGATGATTGTATTGCCATCAGTGGTGGCTCGTCTTATGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGAAGCTTGGGTAGAAGCACTGATAATACAGTAGAACAAGTTTATGTACAAAATTGCAACTTCACCAGCACAACAAATGGAGCAAGAATCAAGACATTTGCTAGTGGATCAGGTTATGCAAGAGGAATCACTTTTGAGCAAATCACATTGATACAAACTGGCTACCCAATAATTATTGACCAATTCTATAACGATGATTCTTTAATGAATGAAGGAGTTGAAGTGAGTGGAATCACATTTCGTGGATTTCATGGAACATGTGTGTATGATGAGGCTATTACCTTAAATTGTGGTCCACAAGGTTGTTTCAACATTACATTGGATCAAATTAACATTGTCTCTTCTCAACCAGGAAAGCAAGTTTCTTGTTCTTGCAAGAACGCCCATGGAACAGCTACATCTACAACTCCAAACTGTTCTTGCATATTGCCATGA 1047 0.3906 MQSLIIICVLIIALISPCICLGFNVGIEAFYNVINFGAKGDGRTDDSQAFIRAWESTCGAQGMPTLVIPPNYVFLLSPLMLKGPCHASNIQIQIEGKIVAAAKDEWVISFNACNGLRVSYLSIVNSPRSHITVNDCVDATFSAITIHSPANAPNTDGFDVSASKNILITDSTIASGDDCIAISGGSSYVNVTGIACGPGHGISIGSLGRSTDNTVEQVYVQNCNFTSTTNGARIKTFASGSGYARGITFEQITLIQTGYPIIIDQFYNDDSLMNEGVEVSGITFRGFHGTCVYDEAITLNCGPQGCFNITLDQINIVSSQPGKQVSCSCKNAHGTATSTTPNCSCILP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00905 348 SMART pbh1 215 236 IPR006626 -
Lapu10g00905 348 SMART pbh1 244 265 IPR006626 -
Lapu10g00905 348 SMART pbh1 163 184 IPR006626 -
Lapu10g00905 348 SMART pbh1 136 162 IPR006626 -
Lapu10g00905 348 SMART pbh1 186 206 IPR006626 -
Lapu10g00905 348 SMART pbh1 274 296 IPR006626 -
Lapu10g00905 348 ProSitePatterns Polygalacturonase active site. 193 206 IPR000743 GO:0004650|GO:0005975
Lapu10g00905 348 PANTHER - 30 106 - -
Lapu10g00905 348 Pfam Glycosyl hydrolases family 28 107 335 IPR000743 GO:0004650|GO:0005975
Lapu10g00905 348 Gene3D - 26 345 IPR012334 -
Lapu10g00905 348 SUPERFAMILY Pectin lyase-like 27 346 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00905 Lapu-Chr10 10836606 10839965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00905 9 337 Glycoside Hydrolase AT5G27530 41.509 2.34e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00905 K01184 - gmx:100801217 466.848