Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00904 ATGCAGGTTCTTATTTTCAAAGCTTGCAATGATCTCAGTGTTCATGACCTGAGCATCACTGATAGTCCAAAGTCTCACATACACGTATATGGCTGTGAGGGTGTTACATTCTCTGCTATGAATCTCACTGCTCCTGCTGATAGTCCCAACACTGATGGAATTGACGTTACTTTTTCCAAAAATGTTTTGATTCAGGATTCCTCTATACAAACTGGTGATGATTGTATTGCCATTAGTGGTGACTCATTTTTGGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGCAGCCTAGGTAAAAGGAATGATACAGTGGAACAAGTATATGTACGAAATTGCAGCTTCACAAATACTAAATATGGAGCAAGAATCAAGTCATTTCCCGGTGGATATGGTTGTGCAAAAGAAATCACTTTTGAGGAAATCACTTTAGAAGAGACCCGTTACCCAATACTCATAGATGAAAGCTATGAAAGTGCTTCTTCAACTAAAAAGCAGAATGGAGGAGTAGAAGTTCGTGGAGTAACATATCGAGGATTTCATGGAACATCCTTTGATGGCAGAGCTATTACCTTAGATTGTGGACAATCAGGTTGCTACGACATCGTATTGGATCAAATTAACATTGTTTCTTCTTTACCATCAAATGCAGCCCTTTGTTCTTGCAGTAATGCCCATGGAACAGTTTCATCTACTGTTCCAGATTGTTCTTGCTTATTGCCATGA 741 0.3968 MQVLIFKACNDLSVHDLSITDSPKSHIHVYGCEGVTFSAMNLTAPADSPNTDGIDVTFSKNVLIQDSSIQTGDDCIAISGDSFLVNVTGIACGPGHGISIGSLGKRNDTVEQVYVRNCSFTNTKYGARIKSFPGGYGCAKEITFEEITLEETRYPILIDESYESASSTKKQNGGVEVRGVTYRGFHGTSFDGRAITLDCGQSGCYDIVLDQINIVSSLPSNAALCSCSNAHGTVSSTVPDCSCLLP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00904 246 SUPERFAMILY Pectin lyase-like 4 244 IPR011050 -
Lapu10g00904 246 ProSitePatterns Polygalacturonase active site. 89 102 IPR000743 GO:0004650|GO:0005975
Lapu10g00904 246 PANTHER - 4 233 - -
Lapu10g00904 246 Gene3D - 1 237 IPR012334 -
Lapu10g00904 246 Pfam Glycosyl hydrolases family 28 3 232 IPR000743 GO:0004650|GO:0005975
Lapu10g00904 246 SMART pbh1 32 58 IPR006626 -
Lapu10g00904 246 SMART pbh1 139 160 IPR006626 -
Lapu10g00904 246 SMART pbh1 59 80 IPR006626 -
Lapu10g00904 246 SMART pbh1 172 199 IPR006626 -
Lapu10g00904 246 SMART pbh1 110 131 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00904 Lapu-Chr10 10831155 10834349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00904 6 241 Glycoside Hydrolase AT5G17200 42.146 1.03e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00904 K01184 - gmx:100818729 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00904 10 10831155 10834349 Lapu10g00904 10 10831155 10834349 ECH