Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00884 ATGGCGCAAATAGTTTTGCATGCTTCGGTACTATTTTTATTCACATTTACACCTGCTACAGTGGCTGAGGGGGTAACTTTGAATGTTGCCGATTTTGGGGCTAAGCCAGATGGTGAAACTGACTCCACAAACGCATTCTTGAGTGCATGGGGTAGAGCATGCAGCTCAACAACACCATCCACCATTTATGTGCCACTGGGAAGGTTCTTAGTTGGTAAAGTAGTGTTCAAGGGGCGATGCAAGAACAAGAGCATGACAGTACGCATTGATGGTACCCTGGTTGCTCCTTCGAACTATGATGTCATTGGAAATGGTGGAAACTGGTTGTATTTTGATGATGTTGATGGAGTTGCAGTGATTGGTGGTGTTCTTGATGGCCAAGGAATAGGTCTGTGGGCATGTAAGAGATCTGGCAAGACTTGTCCAAGTGGTGCTACGAACTTGGGATTTACCAATTCGAACAACATTGTGATCAACGGTGTGACCTCTCTGAACAGCCAAATGTTCCACTTGGTTATTGATCGATGTGAGAATGTGAGACTAGATGGTTTTAAGGTATCAGCTGCAGGAAGCAGCCCTAACACTGATGGCATTCATGTTCAACTCTCATCAGCAGTGACCATTCTCAACTCCAGGATAGCAACAGGTGATGATTGCATCTCAATTGGTCCTGGGACTACTGATCTATGGATACAAAACATAGCTTGCGGACCTGGTCATGGGATAAGTTTAGGGAAGGAATTAGAAGAGGCTGGTGTGGAAAATGTGACAGTAAAAGCAGTGACATTTGCAGGAACTGAGAATGGTGTAAGAATAAAGTCATGGGGGAGACCAAGCAATGGGTTTGCAAGGAACATCCTTTTCCAACATGTTACCATGCTTAATGTCCAAAATCCCATTGTGATCGACCAAAATTATTGCCCCCATGAAAATAATTGTCCTGCTCAGGTTTCTGGGGTTGAAATTAGCAACATTACG 978 0.4417 MAQIVLHASVLFLFTFTPATVAEGVTLNVADFGAKPDGETDSTNAFLSAWGRACSSTTPSTIYVPLGRFLVGKVVFKGRCKNKSMTVRIDGTLVAPSNYDVIGNGGNWLYFDDVDGVAVIGGVLDGQGIGLWACKRSGKTCPSGATNLGFTNSNNIVINGVTSLNSQMFHLVIDRCENVRLDGFKVSAAGSSPNTDGIHVQLSSAVTILNSRIATGDDCISIGPGTTDLWIQNIACGPGHGISLGKELEEAGVENVTVKAVTFAGTENGVRIKSWGRPSNGFARNILFQHVTMLNVQNPIVIDQNYCPHENNCPAQVSGVEISNIT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00884 326 PANTHER - 25 326 - -
Lapu10g00884 326 SMART pbh1 283 304 IPR006626 -
Lapu10g00884 326 SMART pbh1 176 202 IPR006626 -
Lapu10g00884 326 SMART pbh1 253 274 IPR006626 -
Lapu10g00884 326 SMART pbh1 203 224 IPR006626 -
Lapu10g00884 326 SUPERFAMILY Pectin lyase-like 12 326 IPR011050 -
Lapu10g00884 326 Gene3D - 15 326 IPR012334 -
Lapu10g00884 326 Pfam Glycosyl hydrolases family 28 54 326 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00884 Lapu-Chr10 10686075 10687343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00884 26 325 Glycoside Hydrolase AT3G59850 66.447 1.93e-150 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00884 K01184 - gmx:100784002 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00884 10 10686075 10687343 Lapu10g00884 10 10686075 10687343 ECH