Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00874 ATGGCGGTTAGGCAAAGAGCAGTATCTGCACTACCAACCCTTTTACGCACTCTCCGCAAAGAACCGATAAAGCCTCACAACCATGTCAATGCGTTACCCTCTCTTCGACGCGCTTTCTCTTTGTACGATCAGATCAACCTCATCGATCAAGTTCCCGAGGATCAGCTCCGATTTCAAGGGTATAATGATACGGGGTTTACTGTAAATGGGGTTGAGTATGAAGGAAGCTTGCTTTGTCTTGGAAACTTGCTCATGTCTTGGAAACCTAAGAAGTTTTCAGAGATCACAGCTGATAGCTTGTCGCTCTTCCAAATTGTTCGCCCTATTCCAGAGATTTTGATTCTTGGTTGTGGAAGGAACATTCAACATGTAGATCCTGAACTGAGACGGTTTATTCGATCTACTGGCATGAAGTTAGAAGCTATTGACTCGCGCTGCAAGGCGATAGAGGCAGTGAAGTTGGAGAACGGGAGGCCGAGCGCCAACGAGTTCGTCGTTAGCGGAAACGCGATTCCGAGCTACGTTGCCGCGCCGAACGCGCGGATTCAGGATTTGGTTAACCGGAACGACACGCGTCTGAGGATATTTTCCGGCACCGCCAATCCCGCGCTTGCTCAGGAAATTGCCTGCTACCTGGGTCTGGAACTTGGAAAAATTAAGATAAAGCGTTTTGCTGATGGTGAGATATATGTTCAGCTCCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACATGCCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCTTGCAGGAGAGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCGAAGCTTGTAGCAAATTTAATTACAGAAGCAGGCGCAAATCGTGTACTTGCATGTGATCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCACGTGTACGGACAGCCTGTCATACTTGATTACCTTGCCAGCAAAACTATTTGTTCAGACGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAATTATCTGATGCTCCCTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCAGAGGTGATGAATTTGATAGGTGATGTAAGAGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCAAAAGGTGCTGCTCTGTTGCATCAAGAAGGCGCAAGGGAAGTCTATGCATGCACCACGCATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTATCAAGCGGTTTGTTCCAAGAAGTAATCATAACTAATACAATTCCAGTGGCTGAACAGAACTATTTCCCCCAATTAACCGTCCTATCGGTGGCAAACCTTCTAGGCGAGACTGTATGGCGAGTTCATGATGATTGCTCACATTGGCTCTTCCTGTTCATCACTAGATTGTATTGA 1527 0.4604 MAVRQRAVSALPTLLRTLRKEPIKPHNHVNALPSLRRAFSLYDQINLIDQVPEDQLRFQGYNDTGFTVNGVEYEGSLLCLGNLLMSWKPKKFSEITADSLSLFQIVRPIPEILILGCGRNIQHVDPELRRFIRSTGMKLEAIDSRCKAIEAVKLENGRPSANEFVVSGNAIPSYVAAPNARIQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSHWLFLFITRLY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00874 508 NCBIfam ribose-phosphate diphosphokinase 194 497 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lapu10g00874 508 Gene3D - 196 494 IPR029057 -
Lapu10g00874 508 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 192 498 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lapu10g00874 508 Pfam Protein of unknown function (DUF498/DUF598) 59 145 IPR007523 -
Lapu10g00874 508 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 193 309 IPR029099 -
Lapu10g00874 508 Gene3D - 42 150 IPR036748 -
Lapu10g00874 508 SUPERFAMILY MTH938-like 45 145 IPR036748 -
Lapu10g00874 508 SUPERFAMILY PRTase-like 258 494 IPR029057 -
Lapu10g00874 508 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 317 332 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Lapu10g00874 508 Pfam Phosphoribosyl synthetase-associated domain 394 497 IPR005946 GO:0000287|GO:0004749|GO:0009165
Lapu10g00874 508 Gene3D - 336 479 IPR029057 -
Lapu10g00874 508 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 193 503 IPR037515 GO:0004749
Lapu10g00874 508 FunFam Ribose-phosphate pyrophosphokinase 196 348 - -
Lapu10g00874 508 SMART Pribosyltran_N_2 193 309 - -
Lapu10g00874 508 FunFam NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 42 166 - -
Lapu10g00874 508 CDD PRTases_typeI 352 464 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00874 Lapu-Chr10 10583856 10602048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00874 K00948 - gmx:100816430 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00874 10 10583856 10602048 Lapu10g00874 10 10583856 10602048 ECH