Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00854 ATGGCATCATCAGATGAAGAAGGGGAAATTATCCCAGATCTTGTTAATAGTTATTGGTTCGAAAGTGAAAAGGAGAATTTTGTGTCACTTTCTAGTTTGACATTATTGTTTAGCATTAGTGAGATCGAATGTGACTTGGGAGAAAAAGTATTTTTGCGTGGCACCACTGATGATGGCCTGCAGAAAATTTATAAACAGATCATAGGATGGAGATTTGAACTTCCCTATGAGCAGCCTGAGATCTCGGTGCTTTCAAAAGACAAAAATTGGATAATGCTTCAAAGACCAAGGAAGTGTTTTGAAAGTATAATTAGAACAATCTTAGTCACTATATATTGTTTACATTTTCTAAGATGGAATCCAGAGGAATCTCAAATATCTATTTGGGAGAAAATGAAGAAGGCCTTTAGTACATTTGATATCATGCCATCGGAGAATGATATTCTAAATCATGTGAATTTGATGAGAGAAGCTATTAAAAGGGACAGAGATTTAACAAAATCAAAGGATGTTCTTCCTACAATCAAACCAAATTTTATTGTGGACTCAGAGGATGAGGAGCAGAATGTCCAATCTAATGGTGAACTCAATCTGGATGGAGAGCAAAATATTGGATATGATACTGTTTGTTCAATATGTGATAATGGTGGTGAAATACTTCCTTGTGAAGGAAGATGTTTGAGATCCTTCCATGCAACCAAAGAGGCTGGTATAGATGCATTTTGTGAATCTCTTGGCTACACCAGTGCTCAAGTTAAGGCCTTTCCAAACTTCTATTGTCAAAATTGTAAATATAAGCAGCACCAGTGCTTTGCATGTGGCAAATTGGGTTCATCAGATGTATCATCTAAAGCAGAGGTATTTCCTTGTCTTACTGCAAATTGTGGTCACTACTACCACCCTGATTGTGTAGCTAGGCTTCTCTCCCCTGGCATTGACACTGAACAAGAGGAAATAAGAAAGAAAGTTGTCATTGGCAAAACATTTGTCTGTCCTCTTCATACATGTTCCTTGTGTAAAAAAGGTGAAATTACAAGTGTTCATCATTTGCAGTTAGCAATATGTAGACGCTGCCCTAAAGCTTACCACAGAAAATGTTTACCCAAGGAAATTTCCTTCACATTTGATTATGATAAGGGCGTTGAGCAGAGAGCTTGGGATGGTTTACTTGATCATCGAATTTTGATATATTGCATGGATCATGAGATAGATAGCAAACTTGGGACTCCTGCTAGAGACCATCTGGTATTTCCTGATGTGAAAGTCAAGAGGAATGCATTCAATTACAAATTATTTGACAAAGGAAAAGATACTATAAATTTGGGTAAAAGTTTTGAAGATCTTCCTCCAAAGGAAACATTGGTACCAAACTGGGTTCCAAAGCATAGCGTTAGCATTCAAGATGGTGATGTTGCCAAAGATGTGGAGAAAATATGTTGTAAGAAAGATATGCATTCCTCTAGTGGATCAGTCAAGTTTGATAGGGATAGAAAATATTTGAATGTCAAAAATGTGCCTGTATTAAATCATTCCTTGCTAAGTCCTGCAAAAAAGTTACCTTTGAAAGTTGCTAACTTGTCCTGTAATTCAAGATTATATGAAGCTAAATCTCTGCAGAAAAAAATGGTGAGTGGAAGAATTGAAAAAAGTGGCTTTGGGAAGCCACTAGTAAAAAAAATCCGAACATCGCTTGACTTTGACAAGGCTGAAATGGAAAACAGTGTCTTGTCTTTAATGAAAGAATCCATGTCTACATTTAATGAGGAAGAATTCATAAAGAACCATCAAGCCTTCTCTACAACTTCAGGTTTAACCGAAACTGAATTTCATAAGAACTTTACTCGAGGGAAAGTAGAAGGTTCAATTAAGGCCATTCAAACAGCTTTGCAGAAGTTAGAAGAAGGATGTAGTATTGAAGAAGCAAAAGCTATTTGTGATCCAGGGGTCCTCCATCAGCTTTTCGTTTGGCAGGTTGAAAAGCAGCTCAAGGTCTATCTTGCACCTTTTCTTCATGGCATGCGATATACTTCCTTTGGTCGCCATTTCACTAAAATAGACAAACTGAAGGAGGTTGTTAATAGACTTCACTGGTATGTTCAGAATGGAGACATGGTTTTGGATTTCTGTTGTGGTTCTAATGACTTCAGTTGTCTAATGAAATCAAAGCTTGAACAGATGGGGAAGTCATGTTCATTTAAGAACTATGATTTATTCCAACCCAAGAATGATTTCAACTTTGAAAAGAGAGATTGGATGAGTGTCAATGCAGAAGAATTACCCAACGGTTCTAAACTTATCATAGGGCTAAATCCTCCTTTTGGGGTGAAGGGTAGTCTCGCAAACAAATTTATCAACAAGGCATTGACTTTCAATCCAAAACTTCTTATACTTATTGTACCAAAAGTAACTAAAAGACTTGACAGAAAGAAAGGTGGATATGATTTAATCTGGGAGAATGATGAGATGTTTTCAGGAAAGTCATTTTATCTACCTGGTTCTGTTGATGTACGGGACAAGCAATTGGAAGACTGGAACTTGAAGCCACCACCTCTATACCTTTGGAGTCATCCTGACTGGACCACTAAGCATAGGAAAATTGCTGAAAACCATTGCCATATCAAGGAGAAACATGATGTGCATGTGAAGAATTATCTTATGGAGGAGAATCATGACTGTTACCAGGATTACCCTGGCTTACATGCACCTGGAGATGTTTTGAGCATATTTGATGATATTCCATGTGATAATGGTGATGGTGCACATGATGAAGTTGCAACTAGCAGCAATGCTCTGGGTCAGGTGAAGGGAACAGTGTTTTCTGATTGTGGAGGAGAAATGGAATTGGAGAATAGTTTATTACCCTTTGAGGAAGCTCAGGAAATGTGTATTGATATGGAGTTATCAACTCCCTAG 2913 0.3749 MASSDEEGEIIPDLVNSYWFESEKENFVSLSSLTLLFSISEIECDLGEKVFLRGTTDDGLQKIYKQIIGWRFELPYEQPEISVLSKDKNWIMLQRPRKCFESIIRTILVTIYCLHFLRWNPEESQISIWEKMKKAFSTFDIMPSENDILNHVNLMREAIKRDRDLTKSKDVLPTIKPNFIVDSEDEEQNVQSNGELNLDGEQNIGYDTVCSICDNGGEILPCEGRCLRSFHATKEAGIDAFCESLGYTSAQVKAFPNFYCQNCKYKQHQCFACGKLGSSDVSSKAEVFPCLTANCGHYYHPDCVARLLSPGIDTEQEEIRKKVVIGKTFVCPLHTCSLCKKGEITSVHHLQLAICRRCPKAYHRKCLPKEISFTFDYDKGVEQRAWDGLLDHRILIYCMDHEIDSKLGTPARDHLVFPDVKVKRNAFNYKLFDKGKDTINLGKSFEDLPPKETLVPNWVPKHSVSIQDGDVAKDVEKICCKKDMHSSSGSVKFDRDRKYLNVKNVPVLNHSLLSPAKKLPLKVANLSCNSRLYEAKSLQKKMVSGRIEKSGFGKPLVKKIRTSLDFDKAEMENSVLSLMKESMSTFNEEEFIKNHQAFSTTSGLTETEFHKNFTRGKVEGSIKAIQTALQKLEEGCSIEEAKAICDPGVLHQLFVWQVEKQLKVYLAPFLHGMRYTSFGRHFTKIDKLKEVVNRLHWYVQNGDMVLDFCCGSNDFSCLMKSKLEQMGKSCSFKNYDLFQPKNDFNFEKRDWMSVNAEELPNGSKLIIGLNPPFGVKGSLANKFINKALTFNPKLLILIVPKVTKRLDRKKGGYDLIWENDEMFSGKSFYLPGSVDVRDKQLEDWNLKPPPLYLWSHPDWTTKHRKIAENHCHIKEKHDVHVKNYLMEENHDCYQDYPGLHAPGDVLSIFDDIPCDNGDGAHDEVATSSNALGQVKGTVFSDCGGEMELENSLLPFEEAQEMCIDMELSTP* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00854 970 CDD PHD2_NSD 269 334 - -
Lapu10g00854 970 Pfam Cytosine specific DNA methyltransferase replication foci domain 49 133 IPR022702 -
Lapu10g00854 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 265 IPR013083 -
Lapu10g00854 970 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 356 IPR013083 -
Lapu10g00854 970 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 887 - -
Lapu10g00854 970 CDD PHD3_NSD 335 370 - -
Lapu10g00854 970 SMART PHD_3 209 264 IPR001965 -
Lapu10g00854 970 SMART PHD_3 336 402 IPR001965 -
Lapu10g00854 970 SMART PHD_3 269 335 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00854 Lapu-Chr10 10298571 10308821 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00854 - - cam:101512524 1308.12