Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu10g00809 | ATGGGAATCCTCGCTATGCCCTTAGTCATCTCCCTTCTCAAACCCCACGCCACCACTTGCCTCCGCCTCTCCCACTCCCTCCTCCTCCACCGCCGCCGCCACTTCGCCACCACCGTCTCTGCCACCACCACTCCCCATTCTCCTTCACCTTCATCGTCACCTTCTCTCTCACGCCACTCTTCTGCTTCAACTTACTCCGACAATCGTTCCGTTAACTCCTCAACCCTCACCTTCCAGCAAGCCATTCAGCGCCTTCAGGAATATTGGGCTTCTGTTGGATGTTCCATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTTGCGTATGTGGAACCTAGCATCCGTCCTGATGATAGTCGATATGGAGAAAACCCGAATAGGCTCCAAAGACATACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCTCAGGATCTATTTATCCGCAGCCTCTCAGCTCTAGGTATTGATGTTACTGCACATGATATACGATTTGTGGAAGATAACTGGGAAAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATTTGGATGGATGGGATGGAGATTACGCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCTGTATCTGTAGAAATTACTTATGGCCTTGAGCGTATCCTTATGTTATTGCAGGGGGTTGATCACTTCAAGAAGATAAAATATTCTGACGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACCTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTCTTCGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCTTTGCAATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCTTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGCGCTCGTTATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCTCAACTTTGGTTGAAGACAAGAGAGATGCTTGGCTTTCCCCTTGGTTTCATCTCTGAACCTGATAATTTGGTATTGCCAAAAGGAGTTTTGGAAGCTGCATGTGTGAAGGTGCATGATCATTCGAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCGCCTCATGATGTTGTTGATGCCAGTAATCAACTGAAAGATTTAATGCTGCAACTACTTGAACGGCAAAGGTTAAACTATAGTGAGGTGCAAGCTTTTGGCACTCCACGTAGATTAGTGGTTGTCGTTGAAAATCTTTACACAAAACAGGCTGAAAAGGAGGTTGAAGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATAATGAAGGAAATCCAACAAAGGCTATTGAGGGTTTTTCTCGTAGATACTCTGTACCACTGGACCTGGTATACAGAAAGGTCGATGGGAAAACAGAATATGTTTATGCACGTGTAAAGGAGTCTTCAAGACATGCTTTGGAGGTGTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGTGTTGGAATTCTCAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTAGCCCTGCATGGAGATGTAGTAGTCCCATTTACTTTTGCTGGGGTGACAAGTGGAAACATGTCTTGTGGTCTTCGTAATACTTCTTCAGCTGTTGTCCAGGTGGAAAAAGCAGAATCTTATTCAGATGCAATTAAAAATGTGGGAATCAAAGTTTCAGTTGAGGACCGTAAGAAAATTATTTTTGAGCAATCTAATGCATTAGCAAAAGGGGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCTCCTTTTCCCGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAAGATCTTTTAACCATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCAAATGGACAATTATTGCCTTATTTCGTTGCTGTTGCAAATGGAGCAATTGATGAGGCTACTGTGAGGAAAGGAAATGAAGCTGTGCTCAGAGCCCGCTATGAAGATGCGAAGTTCTTTTATGAGATGGACACTCGTAAAAGGTTTACAGAATTCCGAAAGCAACTGAAAAACATTCTATTTCATGAGAATCTTGGGACCATGCTTGATAAGATGACTCGTGTTGAAAACATGGTTTCTGAACTAAGTTGCATCCTAGATATCAGAGAAGATGTGCAACAAATTATCCGTGACGCTGCCTCACTTGCAATGTCTGATCTTTCCACTGCAGTTGTCACTGAATTTACCTCACTTTCAGGAATTATGGGGCGTCACTATGCCCTTAGAGATGGATATTCAGAGCAGATTGCAGATGCCTTGTTCGAGATCACGCTTCCTAGATTTTCTGGGGACACGCTTCCTGAAAGTGATGCTGGCATAGTTTTGGCAATTGCAGATAGATTAGATAGCCTGGTAGGTTTATTTTCTGCTGGTTGTCAACCTAGTTCCACAAATGATCCGTTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAACTATTGGTGGAAAAAAATAAAAATCTAGATTTTAAAAAGGCCCTGGAACTTGCTGCAGAAGTCCAACCCATTAAAGTAGATCCTCATGTAACAGATGATGTATATCAATTTGTTACGCGAAGATTGGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAATTTGTGAGGTCAATCCTCGTTGAAAGAGCAAATTTTCCCTGTCTTGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAGAGGGAACCTTTTTCCCAAAGTTGTTGAAGCATACTCCCGGCCAACTAGAATTGTCCGTGGGAAGGAACATGAACTTCATACGGAGGTGGATGAGGCTGCTTTTGCGACAAATGAAGAGAGAGTTTTATGGAACACGTTTTTGTCTGTCAAAAAGAGTATCAATCCTGGTCTCGACATAGATGATTTTGTAGAAACTTCATCTCAGTTAATACAGCCACTTGAGGATTTCTTTAATAATGTCTTTGTAATGGTGGACGATGACAAGATCAGAGTAAACAGGTTAACTCTGCTAAAAGGAATTGCTGATCTCCCTAAAGGAATAGCAGACCTTACCGTTCTACCTGGATTTTAA | 3219 | 0.4234 | MGILAMPLVISLLKPHATTCLRLSHSLLLHRRRHFATTVSATTTPHSPSPSSSPSLSRHSSASTYSDNRSVNSSTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGFAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLGFPLGFISEPDNLVLPKGVLEAACVKVHDHSRAFVLEIGTEEMPPHDVVDASNQLKDLMLQLLERQRLNYSEVQAFGTPRRLVVVVENLYTKQAEKEVEVRGPPVSKAFDNEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARVKESSRHALEVLSEDLPATIAKISFPKTMCWNSQVMFSRPIRWILALHGDVVVPFTFAGVTSGNMSCGLRNTSSAVVQVEKAESYSDAIKNVGIKVSVEDRKKIIFEQSNALAKGVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGAIDEATVRKGNEAVLRARYEDAKFFYEMDTRKRFTEFRKQLKNILFHENLGTMLDKMTRVENMVSELSCILDIREDVQQIIRDAASLAMSDLSTAVVTEFTSLSGIMGRHYALRDGYSEQIADALFEITLPRFSGDTLPESDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKKALELAAEVQPIKVDPHVTDDVYQFVTRRLEQFLVDKGVNAEFVRSILVERANFPCLAAKSAYKMEELSRGNLFPKVVEAYSRPTRIVRGKEHELHTEVDEAAFATNEERVLWNTFLSVKKSINPGLDIDDFVETSSQLIQPLEDFFNNVFVMVDDDKIRVNRLTLLKGIADLPKGIADLTVLPGF* | 1073 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu10g00809 | 1072 | SUPERFAMILY | Class II aaRS and biotin synthetases | 77 | 355 | IPR045864 | - | |
| Lapu10g00809 | 1072 | SUPERFAMILY | HD-domain/PDEase-like | 719 | 850 | - | - | |
| Lapu10g00809 | 1072 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 77 | 351 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | FunFam | Glycine--tRNA ligase, chloroplastic/mitochondrial 2 | 280 | 359 | - | - | |
| Lapu10g00809 | 1072 | NCBIfam | glycine--tRNA ligase subunit alpha | 77 | 361 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | NCBIfam | glycine--tRNA ligase subunit beta | 391 | 1068 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PANTHER | GLYCYL-TRNA SYNTHETASE | 74 | 1070 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 280 | 359 | - | - | |
| Lapu10g00809 | 1072 | MobiDBLite | consensus disorder prediction | 39 | 70 | - | - | |
| Lapu10g00809 | 1072 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 388 | 1069 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | Pfam | Glycyl-tRNA synthetase beta subunit | 391 | 934 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 130 | 145 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 231 | 246 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 208 | 228 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 151 | 171 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 182 | 206 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 316 | 332 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 742 | 1034 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | CDD | GlyRS_alpha_core | 77 | 355 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | Gene3D | Bira Bifunctional Protein; Domain 2 | 63 | 279 | IPR045864 | - | |
| Lapu10g00809 | 1072 | Pfam | Glycyl-tRNA synthetase alpha subunit | 78 | 355 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 76 | 356 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Lapu10g00809 | 1072 | FunFam | Glycine--tRNA ligase alpha subunit | 70 | 279 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu10g00809 | K14164 | - | gmx:100787365 | 1883.61 |