Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00763 ATGTTCCTTTCACTCACGTATTCCTTCGCGTTCTTCTTCACTCTCATCCTCACATCATCATCACCTTCACACATTACAACGTTCACACCACCAGCCACCAAAATATCCATCACAAGTCACAACATTGAAAGCCTCACCAATGCTGACAAAGGGACCAAAATCGCAGGTATATCGCAGTTTAAACGATATCTACATCGTTTTGGGTACCTACAAAACAACAACAACGACACTTTTGATGAAGAATTTGATGTCGTGCTGAAATCGGCTCTCGTTAGATACCAAGGAAACCTTGGCCTCCAAGTAACCGGGAAGCTCGACTCCAACACGGTTGCTCAAATGATCACACCAAGATGTGGTGATCCAGATGCAAACACAAGACCTCACAATCACAATCACAATCACAATCACGTCCACAACGTGCATACTTCAAAGAATTTCGTGTTTTTTCCTGGAAAACCACGCTGGTCTCGTTCAATGCCAATGACACTCACCTATGCCTTCTCACGTGAGAACATGATCCGTAGTTTGAGCATGAAGGAGATAAGAGAGGCATTCCAACGTGCATTCTTGAGATGGGCTTCGGTGATTCCGGTGAGCTTTGTTGAGGTGAGTGACTCTGAAGTTTCGGATTTGAAAATAGGGTTTTACAATGGGGAGCATGGTGATGGTGAGCCCTTCGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATAGGCCGCCTCCACCTTGACGCGGCAGAGACATGGGCGGTGGACTTCGAGGCCACCGCGTCGGAGGCGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTAATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTAATCTGAACATTGATGACATAAAGGGAGTGCAATCTCTGTATGGATCAAACCCTAATTTCAGATCCCAGTGGTCACTAGAATCTGATATGTCCACAAATAAAGGTTCCGACTTTGTGAAACCTTTGAGAAATTCAATGATGAAGTGGGGTGGAGTATGA 1065 0.4685 MFLSLTYSFAFFFTLILTSSSPSHITTFTPPATKISITSHNIESLTNADKGTKIAGISQFKRYLHRFGYLQNNNNDTFDEEFDVVLKSALVRYQGNLGLQVTGKLDSNTVAQMITPRCGDPDANTRPHNHNHNHNHVHNVHTSKNFVFFPGKPRWSRSMPMTLTYAFSRENMIRSLSMKEIREAFQRAFLRWASVIPVSFVEVSDSEVSDLKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATASEAAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSQWSLESDMSTNKGSDFVKPLRNSMMKWGGV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00763 354 SMART col_5 151 318 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lapu10g00763 354 PANTHER MATRIX METALLOPROTEINASE 42 322 - -
Lapu10g00763 354 Pfam Matrixin 155 317 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lapu10g00763 354 ProSitePatterns Matrixins cysteine switch. 116 123 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lapu10g00763 354 PRINTS Matrixin signature 113 126 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lapu10g00763 354 PRINTS Matrixin signature 270 295 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lapu10g00763 354 PRINTS Matrixin signature 209 237 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lapu10g00763 354 PRINTS Matrixin signature 304 317 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lapu10g00763 354 PRINTS Matrixin signature 185 200 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lapu10g00763 354 Pfam Putative peptidoglycan binding domain 56 113 IPR002477 -
Lapu10g00763 354 Gene3D Collagenase (Catalytic Domain) 48 322 IPR024079 GO:0008237
Lapu10g00763 354 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 147 320 - -
Lapu10g00763 354 CDD ZnMc_MMP 154 317 IPR033739 GO:0008237|GO:0008270
Lapu10g00763 354 FunFam Metalloendoproteinase 1 47 322 - -
Lapu10g00763 354 SUPERFAMILY PGBD-like 49 122 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00763 Lapu-Chr10 9465381 9466646 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00763 - K07999 gmx:100781237 545.428