Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu10g00761 | ATGGGGAAAATCCCACCTTCATTCCGCTCTGCAATCGGAAACCCTAACATTCGAAACCCTTCTTCCCTTTTCCGTCCTCAGCCACCTTCTCCTCCCTCCAAACCAATACCCTCTCGCAAGAAACAATCCCCAAAATCCATCCCACAGCCAAACCCTATCTTCAAATCCCCAAATCTCCAAGACGCCAAGAAAATCTTCGACTCCATCGCCAATTCCTCCAAAGACCCCCGCTTTCCCAATTCCCTCCTCCATTCCTACGCCAAAATCGCCACCTCCACCACCGATTCCGTCAAATTCCTCCACCACATCACCAAAACCCTCCCTTCGTTCTCCCCCGATCATTCCACCTTCCACATTCTCCTTTCCCACTCATGCACCAACCCCGATTCCAATTCCAATTCCAATTCCCCTCTCTCCCCAATCCACCAAATCCTAAATTCAATGCACGCCGCCGGCGTCAACCCTGATGCCGCCACAGCTGACGTTGCAGTCCGCGCCTTGTGCTCCGCCGCCCACCTTGACCACGCCGTTGAGTTGATAAAAGAATTCGCCTCCAAACAGTGCCCTCCGGACACCTACACGTTCAATTTCCTCGTCAAGCACCTCTGCAAAGCCCGCGCCCTGTCCACTGTCTACGCCTTCATCGACGAAATGCGCGAAAAATTCGGTGTAAAGCCTGATCTTGTTACCTACACTATCTTGATTGACAATGTGTGTAATGGTAAGAACTTGAGAGAGGCGATGAGGTTGGTCAGTGTGCTTCATGAGGAAGGGTTTAAGCCTGATTGCTTTGTGTATAACACGATTATGAAAGGGTATTGTGTGTTGAGTAGAGGGAGTGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGTAGGGTGGTGGAGGCGAAGAAGCTGCTGCGTGTGATGGCGGAGAACGGGTATTTTCCTGATGAGGTGACTTATACTACATTGATGAATGGGATGTGTAGGAAGGGGGACGCGCTGGCGGCTCTGGCATTGTTGGGGGAGATGGAGGAGAAGGGTTGCAGCCCCAATGAATGCACATATAACACACTGCTGTTCGGGTTGTGTAAGGCGAGGTTGTTGGAGAAGGCGATTGAGTTCTATGGGGTGATCAAAGCGGGTGGTTTGAAGCTTGATACGGCTTCTTATGGGACATTTGTGAGGGCACTGTGTAGGGATGGGAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGTTGTTGAGAGCAAGAGTTTGACAGATGTTGCTGCTTACTCCACGTTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCCAAGGAACAAGGGCTTGCTGTTTAA | 1386 | 0.5043 | MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSPPSKPIPSRKKQSPKSIPQPNPIFKSPNLQDAKKIFDSIANSSKDPRFPNSLLHSYAKIATSTTDSVKFLHHITKTLPSFSPDHSTFHILLSHSCTNPDSNSNSNSPLSPIHQILNSMHAAGVNPDAATADVAVRALCSAAHLDHAVELIKEFASKQCPPDTYTFNFLVKHLCKARALSTVYAFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMAENGYFPDEVTYTTLMNGMCRKGDALAALALLGEMEEKGCSPNECTYNTLLFGLCKARLLEKAIEFYGVIKAGGLKLDTASYGTFVRALCRDGRVAEAYEVFDYVVESKSLTDVAAYSTLESTLKWLKKAKEQGLAV* | 462 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu10g00761 | 461 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 262 | 296 | IPR002885 | - | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 227 | 261 | IPR002885 | - | |
| Lapu10g00761 | 461 | MobiDBLite | consensus disorder prediction | 22 | 38 | - | - | |
| Lapu10g00761 | 461 | Pfam | PPR repeat | 398 | 428 | IPR002885 | - | |
| Lapu10g00761 | 461 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 222 | 447 | - | - | |
| Lapu10g00761 | 461 | Gene3D | Tetratricopeptide repeat domain | 51 | 254 | IPR011990 | GO:0005515 | |
| Lapu10g00761 | 461 | MobiDBLite | consensus disorder prediction | 39 | 56 | - | - | |
| Lapu10g00761 | 461 | Gene3D | Tetratricopeptide repeat domain | 255 | 325 | IPR011990 | GO:0005515 | |
| Lapu10g00761 | 461 | Gene3D | Tetratricopeptide repeat domain | 326 | 393 | IPR011990 | GO:0005515 | |
| Lapu10g00761 | 461 | Gene3D | Tetratricopeptide repeat domain | 394 | 457 | IPR011990 | GO:0005515 | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Lapu10g00761 | 461 | Pfam | PPR repeat family | 261 | 310 | IPR002885 | - | |
| Lapu10g00761 | 461 | Pfam | PPR repeat family | 331 | 380 | IPR002885 | - | |
| Lapu10g00761 | 461 | Pfam | PPR repeat family | 190 | 240 | IPR002885 | - | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
| Lapu10g00761 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 405 | 433 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 229 | 263 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 334 | 368 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 369 | 402 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 299 | 333 | IPR002885 | - | |
| Lapu10g00761 | 461 | NCBIfam | pentatricopeptide repeat | 265 | 297 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu10g00761 | 112 | 444 | Glycosyltransferase | AT1G05670 | 29.129 | 1.93e-40 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu10g00761 | - | - | gmx:100782321 | 729.939 |