Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00760 ATGATGACTCTTCTTCATTCCTTGCCATCCATGTCCAACTTTTCCTCCAACCAGATTCGCTTTCTCCTCAACACCTTGAACGAAGTCAACTTTGACTCCGTTTTCCATCAACTCTCTCAGTTTGCTGAATTTGGAACCCCTGGATGCATTTTGTTGCTTCAAACTTGCTTGGATCATTATGGTTATGCCAGAAGAGATACGAAAGACATGCTGCATGAGCCAATTGTTGGGGCAGTCATTAAATACCTCTTGGACAAACCAAACTTCAGTACAGTGTTTACTGAGTCAATGAAGAATTTGGAAATTAATGAAAGCCTTTTAGAAAATTTTTGTAATGGATTGCAGTTATCGTTATTGGAAAAAATTATCATCAGTCTTGCTTTATCTGATTCTGAGAATCCTGATGTCAGGCTGTGTGGCAAAAACTTTTGCATGGCTCAGATTGAGGAATTGTGTGCCAACCCTGGTTCTTTGAGTTTCCATGAGCAAATTCACAACATTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCATGTGGATTCCTTTATGCAGATATTATCACTTGTGGAGTTCAATGACACGCCACCTTTTGTCTTGCGTCCATTGCTTCCTGATGAGATGCACGAGGCTGATTTTTTGAGGAATATGGAGTTGTTCCACGACTCTGGAGAAAATGATTTTGATGCTATTTTGGCTGACATACAGAAGGAAATGAACATGGGTGATATTGTGAAGGAGCTGGGCTATGGATGTACTGTTGATGTCTCACAGTGCAAGGAAATATTTTCGCTCTTCTTACCTTTAACTGAACATACACTCTCTAAATTACTAGGTGCTATTGCTTGTACCCATATTGGGCTGGAGGACAACCAAAACATGTACTTGACTTTTCGTGCAGCCCATGGATACAATGTGTCTGAGTTGCCGCCACTGAACTCTTGGAATATTGATGTCTTGATTGACACAGTCAAGCATCTTGCACCTCATACCAATTGGGTACGTGTTATTGAAAATCTTGATCATGAAGGGTTCTTTCTTCCTAGTGAGGAGGCATTCTCTTTTCTCATGTCTGTATATAAACATGCCTGTAAGGAACCATTTCCTCTCCATGCCATCTGTGGGTCCATCTGGAAGAATACTGAGGGTCAGTTGTCTTTCCTTAAATATGCTGTATCAGCACCACCGGAAATATTTACCTTTGCACACTCTGGAAGACAGCTGGCATATGTTGATGCAATTAATGGCCACAAGCTTCAAAATGGACATCCAAATCATTCATGGCTGTGTCTTGATCTTTTAGACGTCCTCTGCCAGCTAGCTGAGAAGGGTCATGCCGGTATCGTTCGAACAGTCCTTGATTATCCCCTTAAACACTGTCCTGAAGTCTTGCTTCTTGGGATGGCACATATTAATACTGCCTACAATCTCTTGCAGCAGGAAGTATCTCCAATTGTTTTTCCCATGATTGTAAAAAGTGCTGTAGGCAGTGGGATGATTCTACACCTTTGGCATGTTAATCCTAATTTGGTCATTAGAGGGATTATTGATTCTCAAAATAATGACGCAGACAGCATTATAAGAATCGTGGACATCTGCCATGAGCTAAAGATTTTATCATCTGTGGTGGAAATTATTCCTTCTCATTATAGTATAAGGTTAGCAGGTGTTGCATCTAGAAAAGAATTACTTGACCTTGAAAAGTGGTTGAGTAGCAACTTAATTACATACAAGGAAACCTTTTTTGAGGAGTGTCTCAAGTTCTTGAAGGATGCCCATTTTGGTGGATCACAGAACCTTTCTGGAAAATCTTTTCATCCATCTGCTGCTGTTCTGAGTCTATATGCTGAGACCACTGCTACTGTGTTGAAGGTTCTTAAATCTCATAATGACTTGGTTGCCACTGGACAACTTTCTGAGGAGTTGGAGAGGCTGCATATATCTATTATAGATTCAAATCCAAGGCTTCAGAATGGTGGGGCAGCTGATTCATCTACTTCTGATGGATATGCAGATGATATCGAAGCAGAAGCAAACTCTTACTTCCATCAAATGTTCTCTGATCAGTTAACCATTAATGCAATGGTACAAATGCTTGCTAGATTCAAGGAATCTTCAGTGAAGAGGGAGAAATCAATTTTTGAATGCATGATTGCGAACTTGTTCGAGGAGTATAGATTTTTTCCAAAGTATCCTGAAAGGCAACTTAAAATTGCTGCAGTTCTCTTTGGTTCTGTGATCAAGCATCAGCTTGTAACTCATCTATCTTTGGGGATTGCACTTCGTTATGTTCTTGATGCATTGCGCAAGCCTGCAGATTCAAAAATGTTTTTGTTTGGAAGTCTGGCATTGGAGCAGTTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCATATTCTTCAAATTTCCCATTTGCGCAGTACACATTCAGAAATAGTTGCTTTTATTGAGCAGGCCCTCGCAAGGATTTCCTCTGGTCATTCAGATGTTGATGGGGCGAGTCATGCTTCTGTCATTACTAACCATCATTCTGCACAGGCTACATTAGGGCATGTAGAGCAGCTCAGTGGCTCCACCATCATTCAACCTGGGCCACAACATTTGTCCCTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAGCTTCTGGTGGTTCATCCACGGATGTGAAACCACTGTTATCTTCTCTTGGGCAATCTTCAGTACCAACACCTCCTGATGCTTCTAGTACCAATAAGTTACATAGCTCAGTCAGCACCTCGTCAATGCTATCTTCTTCTTCTCCTGGTTTTGTTCGCGCTCCTCGTGGACCTCCTTCTACCAGATTTGGATCTGCCTTGAATATTGAAACTTTGGTTGCTGCTGCTGAGAAAAGAGAAATTCCTATTGAGGCTCCAGGGTCAGAGGTTCAGGACAAGATATTATTTATAATTAATAATGTTTCTGCTGCTAATATAGAAGCTAAAGCAAAAGAATTTACTGAAATTTTGAAAGAGCAGTACTATCCTTGGTTTGCGCAGTATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTCCATGACCTGTATCTGAAATTCCTTGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTGTTCAGGCAACATATGAAAATTGCAAGGTTCTTTTAGGATCTGAACTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGGAGCTGGCTTGGAAAGTTAACAATTGGCCGGAATCAGGTGTTGAGGGCTCGTGAAATAGACCCAAAGTCTTTGATTATGGAGGCATATGAGAAGGGCCTGATGATTGCTGTTATTCCATTTACATCAAAGGTTCTTGAACCATGCCAGAGCAGTCTTGCATACCAACCTCCTAATCCTTGGACTATGGGCATTTTGGGATTGCTTGTTGAGATTTATTCAATGCCAAACTTGAAAATGAATCTCAAGTTTGACATAGAGGTTTTATTCAAAAATCTTGGTGTAGATATGAAGGATGTCACACCAACTTCTCTCCTGAAGGATAGAAAAAGAGAATTCGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGGGCATCTCAATCACAAATGATTACTGATATAAAATCCGGTCTTGTACCTCCAGTAAATCAAGTGGAATTACCACTTGAAGTCACCAATCCATCCAATACGGGTGCTCACCCGCATATGCTTTCTCAGTATGCTGGTCCACTTCATATGTCCTCGGGTGCATTGATGGAAGATGAAAAGGTAACACCTCTGGGATTGTCTGATCAACTTCCCTCTGCTCAAGGACTGTTACAAGCAACTCCTGCCCAAGCACCTTTTTCTATTAGCCAGCTTCCAACGCAGATCCCTAATATTGGAACTCACGTTATTATTAACCAAAAGCTCAGTGGTTTTGGTTTGCAAATGCATTTTCAGAGAGCGGTACCCATTGCAATGGATAGAGCTATCAAAGAGATAGTGTCTAGTATTGTGCAGCGTAGTGTTTCCATAGCAACACAAACTACAAAGGAGCTTGTTTTAAAGGATTATGCCATGGAATCTGATGAGACACGCATATTAAATGCTGCACACTTAATGGTCGCTAGTCTGGCTGGGAGTTTGGCTCATGTTACTTGCAAAGAGCCATTACGGGCATCAATCTCTGGTCAACTGAGGACTTCACTTCAGAACTTAAATATTGCTAATGAAATTTTGGAACAAGCTGTGCAACTTGTCACCAACGATAATCTTGATCTAGGTTGTGCAGTTATTGAACAGGCTGCTACTGATAAGGCAATAAACACCATCGATACAGAAATTGGTCAACAACTGTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGTTCTACATTTTTTGATGCAAATTTGTATCCACAAGGTTCTATGGGCGGTGTTCCAGAGCCTCTGCGCCCCAAGCCTGGCCAGTTGTCACTCTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCTTGGCAAAACCAGTCTAGCCAGAGCTCACATTCTATGTCTGCTGGTGTTGCTGTTCAATCTGGCAGTACTGGTCTTCCTAGCACCAATGGTTCTGTATCTGGTCAGGTTAACCCTGGTTACCCTGTGAGCTCAGGATACGAAGGAGTATCTCGACCATTAGAAGATATGACAGAGTCTAATTTGACTCCACATTTTAGTGCTTCCTCAATTCACATTAGAGCATCTGATAGTGTTTCCCAGCATAGTTTGGAGAAAGAGTCTGTTGCCTCATTTCCTTCAGCTGCTTCCACTCCTGAATTGCATGCGGTTGATTCGTCTGATGTTAAAGAATCTGGAACTTCTTCACAGCCATTAGTTACATCAGGTGCCATGGAGCGCCTTGGAAGTAGTTTCTTGGAGCCTTCTCTCACTACAAGAGATGCCCTAGATAAATTCCAAATTGTCGCACAAAAGTTGGAAGCTATGGTCAGCAGTGACTCCAGGGATGCAGAAATCCAGGGTGTCATCTCTGAGGTTCCTGAGATCATACTTAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTATATGATAATGCATCAAACAACATCCATGTCTCTGCTCATCTTGCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCTGTGAAGGAGCTCACTAGTTGGGTAATTTACTCGGAAGAAGAAAGAAAATATAACAAAGAAATTACTGTTGGCCTCATTCGTAGTGAATTGCTAAATCTTACTGAGTACAATGTTCATATGGCAAAACTTATTGATGGAGGACGGAACAAGGCTGCAACGGAGTTTTCCATTTCCCTTCTTCAAACCCTGGTTATCGAGGAACCTAAAGTTATTTCTGAACTTCACAATCTTGTTGATGCTTTGGCTAAGCTTGCTGCAAAGCCTGGATGCCCTGAGCCATTACCGCAGCTTCTTGAAATGATCAAGAATCCTGGTGCTCTATCCTCTAGCAATGCTGGAAAGGAGGATAAGGCAAGACAATCAAGAGACATTAAGGTTCCTGGTCTGCTACCTACAAACAGGGAAGAGTTCAACAGCGTAGATTCTATTGAACCAGATCCTGCTGGGTTCCGGGAGCAGGTTTCCATTTTGTTTACAGAATGGTATAGGATATGTGAACTTCCTGGTGCCAATGATACAGCCTCTGCCCACTTCATCTTGCAATTGCATCAGAATGGGCTGCTGAAGGGGGATGATCTTACAGATCGCTTTTTCCGCCTGTTACTGGAGCTTGCTGTTGCACATTGCTTATCCACTGAGATGATTAATTCAGGGTCACTACAATCCCAACAGCTGCAGGCAATGTCATTTCTTGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAACAAACCCTTTCTTCTCTCCAAGATTCTGGCTGTTGCTGTCAGATTCATTATAAAAGATGCAGAGGAGAAGAAGGCATCGTTTAATCCAAGACCACTTTTCAGATTATTCATCAACTGGCTTCTAGATCTTGGTTCACTTGAGCCAGTTACAGATGGTGCAAATCTCCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCATTGCAGCCCCTCAAAGTTCCTGCGTTCAGCTTTGCATGGCTTGAGCTGATAAGTCACAGGAGCTTCATGCCTAAAATGTTGACTGGTAATGGTCAGAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGACCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGACCCGGTCCGTGTCCTCTACAAAGGGACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTTCCCGAGTTTCTCTGTGACTATCACTTTACCTTTTGTGATGTTATTCCTCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCACGTAGTATGAGGCTGCCCGATCCATCTACTCCTAATTTGAAGATTGATTTACTTCAAGAAATTACCCAATCACCCCGCATTCTTTCTGAGGTTGATGCTGCACTTAAAGCAAAGCAGATGAAGGCTGATGTAGATGAATACCTTAAGACAAGGCAACAGAGTGCTCCATTTTTGTCTGAACTGAAGGATAAGACGCTTCTCTCACCCAATGAAGCTGCCTCTGCTGGGACTCGATACAATGTGCCTTTAATAAACTCACTTGTGCTATATGTTGGAATGCAGGCAATCCATCAGCTTCAGGGACGAACGCCCCATACACAATCTTCGGCAAATGCTTTCCCCTTAGCCGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTCATTGTGGACTTAGACACTGAAGGCCGCTATCTGTTCCTAAATGCTATTGCCAACCAACTGCGCTATCCTAACACCAATACACACTACTTTTCCTTCATCCTTCTTTACTTGTTTGCTGAATCAAACCAGCAGGAAGTTATTCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGACTCCTCATTACCTTTATTGAACTTATCAAGAATCCTAGGTATAACTTCTGGAACCGGAGTTTCATCAGATGTGCGCCGGAGATAGAAAAACTTTTTGAATCTGTGTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGATAACATGGTGTCTGGTTGGGTCTGA 7224 0.4199 MMTLLHSLPSMSNFSSNQIRFLLNTLNEVNFDSVFHQLSQFAEFGTPGCILLLQTCLDHYGYARRDTKDMLHEPIVGAVIKYLLDKPNFSTVFTESMKNLEINESLLENFCNGLQLSLLEKIIISLALSDSENPDVRLCGKNFCMAQIEELCANPGSLSFHEQIHNIIMFLKQSEGLSKHVDSFMQILSLVEFNDTPPFVLRPLLPDEMHEADFLRNMELFHDSGENDFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEIFSLFLPLTEHTLSKLLGAIACTHIGLEDNQNMYLTFRAAHGYNVSELPPLNSWNIDVLIDTVKHLAPHTNWVRVIENLDHEGFFLPSEEAFSFLMSVYKHACKEPFPLHAICGSIWKNTEGQLSFLKYAVSAPPEIFTFAHSGRQLAYVDAINGHKLQNGHPNHSWLCLDLLDVLCQLAEKGHAGIVRTVLDYPLKHCPEVLLLGMAHINTAYNLLQQEVSPIVFPMIVKSAVGSGMILHLWHVNPNLVIRGIIDSQNNDADSIIRIVDICHELKILSSVVEIIPSHYSIRLAGVASRKELLDLEKWLSSNLITYKETFFEECLKFLKDAHFGGSQNLSGKSFHPSAAVLSLYAETTATVLKVLKSHNDLVATGQLSEELERLHISIIDSNPRLQNGGAADSSTSDGYADDIEAEANSYFHQMFSDQLTINAMVQMLARFKESSVKREKSIFECMIANLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLRSTHSEIVAFIEQALARISSGHSDVDGASHASVITNHHSAQATLGHVEQLSGSTIIQPGPQHLSLQLQQRRENPLDDRHKASGGSSTDVKPLLSSLGQSSVPTPPDASSTNKLHSSVSTSSMLSSSSPGFVRAPRGPPSTRFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLVEIYSMPNLKMNLKFDIEVLFKNLGVDMKDVTPTSLLKDRKREFEGNPDFSNKDVGASQSQMITDIKSGLVPPVNQVELPLEVTNPSNTGAHPHMLSQYAGPLHMSSGALMEDEKVTPLGLSDQLPSAQGLLQATPAQAPFSISQLPTQIPNIGTHVIINQKLSGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGVAVQSGSTGLPSTNGSVSGQVNPGYPVSSGYEGVSRPLEDMTESNLTPHFSASSIHIRASDSVSQHSLEKESVASFPSAASTPELHAVDSSDVKESGTSSQPLVTSGAMERLGSSFLEPSLTTRDALDKFQIVAQKLEAMVSSDSRDAEIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQTLVIEEPKVISELHNLVDALAKLAAKPGCPEPLPQLLEMIKNPGALSSSNAGKEDKARQSRDIKVPGLLPTNREEFNSVDSIEPDPAGFREQVSILFTEWYRICELPGANDTASAHFILQLHQNGLLKGDDLTDRFFRLLLELAVAHCLSTEMINSGSLQSQQLQAMSFLAIDIYAKLVFSILKGSNKPFLLSKILAVAVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSAPFLSELKDKTLLSPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQSSANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDNMVSGWV* 2408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00760 2407 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 656 825 IPR032193 -
Lapu10g00760 2407 CDD NOT1_connector 1640 1831 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 1509 1555 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 1509 1545 - -
Lapu10g00760 2407 FunFam Transcription regulator 1868 2160 - -
Lapu10g00760 2407 Gene3D - 946 1191 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 1582 1599 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 877 950 - -
Lapu10g00760 2407 Gene3D - 2157 2387 - -
Lapu10g00760 2407 Pfam CCR4-Not complex component, Not1 2018 2388 IPR007196 -
Lapu10g00760 2407 FunFam Transcription regulator 661 829 - -
Lapu10g00760 2407 Coils Coil 1402 1422 - -
Lapu10g00760 2407 FunFam Ccr4-Not transcription complex subunit 944 1191 - -
Lapu10g00760 2407 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 970 1189 IPR032191 -
Lapu10g00760 2407 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1316 1458 IPR024557 -
Lapu10g00760 2407 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 485 628 IPR032194 -
Lapu10g00760 2407 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 35 2396 IPR040398 GO:0017148|GO:0030015
Lapu10g00760 2407 FunFam CCR4-NOT transcription complex subunit 1 2157 2387 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 1582 1625 - -
Lapu10g00760 2407 MobiDBLite consensus disorder prediction 895 936 - -
Lapu10g00760 2407 Gene3D - 1868 2156 - -
Lapu10g00760 2407 Gene3D - 661 828 IPR038535 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00760 K12604 - gmx:100783935 4458.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00760 10 9402938 9427558 Lapu10g00760 10 9402938 9427558 ECH