Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00717 ATGCATGCAGAAGAGATACCAGCTGAACCAGATAACATGAAGGAGCAGGGTACAGTGCCTATAGGTCATTCAAGGGAGACCACAAGTCAATCAGGATCTTTAGGTTCAGGTGGAGATGTTCCTCTGTATCCTCCTAACGTGTATGCTCCCCAAGCCCAGGCTTTCTACTATAGAGGTTTTGACAATGGCAATGGTGAATGGGATGAATATTCTTCATATGTCAATTCTGAGGGATTAGAAATCGGATCTCCTGGTGTCTACAATGAAAATCCATCTCTTATTTTCCATTCTGGTTATGGCTTCAACCCACAAATGCCTTATGGACCATATTCCCCGGTTACCACACCTTTGCCTTCTGTAGGTGGAGACACACAGTTATACTCCTCGCAGCAATTTCCATACACTGGACCACCTTATTATCCTCAGATGATTCCTCCTAGCTTATCATATCTTAATTCACCTACTCCAGTTTCACAGCCAGAGCTCACCAACATGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCAGGCTATCCATCAGTGGGATCTTTTGGTAGAGGCAGCTTTCCTGTAGCACCTGGTTCCTTTGGCTTTCATGAATCCCAACAAGGATTTGAAGGATCAAGATCTGGTGGAATCTGGTCAGATTGCTCAAAACCCTCAGAAAGACAAAGATCTTTGATGCCTCTATCACCATCTGTTTCTCCACGGCCAATGGGCTCACTTGGGTCATTTGGGCCAAGTGTTGGAATGGCCTCTCATCAACAGCAATCATTGTATGGTTTTGGATCTGGTTCAAACACTTATGGTAGAGGCTACCTGCCTAACCAGGGCTCTAGCTTTGGGGGTACTTCTATTTCCAATCTTAATGATAGGAGTTGTGCTTCTCTTGAAAACAACAGGAGGCAAGGGCGGCCATCTGCATCTCTTTGCAATTGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCAAGGGCCTCAAAGCTGAAAAATCAAATTTTGGCCGAAAAAAGTTCTGTGGATAATAGTAAAAACAGTGGATCTACTGCCAAGTTTCAAAATGAATCACTTAATCGATCAGATTTTGCCATAGATTACAAGGATGCCAAATTTTTTGTCATCAAATCTTACAGTGAAGATAATGTACACAAGAGCATTAAATATGCTGTGTGGGCTAGTACACCAAACGGAAACAGGAAGTTAGATACTGCATATCGCCAAGCAATGGAGAAGCAAGAGGCCTGCCCTATATTTCTCTTTTTCTCGGTAAATGCTAGTGCTCAGTTCTGCGGGGTAGCTGAAATGGTTGGACCTGTCAATTTTGATAAGAGTGTAGACTTCTGGCAGCAAGATAAGTGGAGTGGGCAGTTTCCCGTGAAGTGGCATATAATTAAAGACGTTCCAAACAGTCAGTTTCGTCACATTGTTCTTGAAAATAATGATAACAAGCCTGTGACTAACAGTCGAGATACTCAGGAGGTGAAGTTGGCACAGGGGATTGAAATGTTGACCATTTTTAAAAACTATGAAACTGATGTTTCCATCCTGGATGATTTTGATTTCTACGAAGACAGGCAGAAGGCCATGCAAGAAAGGAAGGCAAGGCAGCAAAGCAGCATGATGACTACTGGGTTAGTTGGAGAAAATGAACATAGGAGTTCTGCTAACACTACTGGTGATTTTATGAAGCAGATGTCAAAGAGTTTTGCTCTAGTTGTCCGCTTAGATGAGAATAACAATGAAGTTGCTGCGGACAGAGATAGTTTGGTCTCTCATGGCCCCATTGGTAATATAGTTAAATCTGATGATGGTCAATCAGTGACTGCCTCTTCAACTCAAACCAGTTAG 1872 0.4268 MHAEEIPAEPDNMKEQGTVPIGHSRETTSQSGSLGSGGDVPLYPPNVYAPQAQAFYYRGFDNGNGEWDEYSSYVNSEGLEIGSPGVYNENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSSQQFPYTGPPYYPQMIPPSLSYLNSPTPVSQPELTNMVGIDQQVDNMFFGPRAGYPSVGSFGRGSFPVAPGSFGFHESQQGFEGSRSGGIWSDCSKPSERQRSLMPLSPSVSPRPMGSLGSFGPSVGMASHQQQSLYGFGSGSNTYGRGYLPNQGSSFGGTSISNLNDRSCASLENNRRQGRPSASLCNCNGTLDILSEQNRGPRASKLKNQILAEKSSVDNSKNSGSTAKFQNESLNRSDFAIDYKDAKFFVIKSYSEDNVHKSIKYAVWASTPNGNRKLDTAYRQAMEKQEACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLAQGIEMLTIFKNYETDVSILDDFDFYEDRQKAMQERKARQQSSMMTTGLVGENEHRSSANTTGDFMKQMSKSFALVVRLDENNNEVAADRDSLVSHGPIGNIVKSDDGQSVTASSTQTS* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00717 623 MobiDBLite consensus disorder prediction 21 36 - -
Lapu10g00717 623 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 66 592 IPR045168 -
Lapu10g00717 623 MobiDBLite consensus disorder prediction 205 255 - -
Lapu10g00717 623 Pfam YT521-B-like domain 377 515 IPR007275 GO:0003723
Lapu10g00717 623 MobiDBLite consensus disorder prediction 206 236 - -
Lapu10g00717 623 ProSiteProfiles YTH domain profile. 377 514 IPR007275 GO:0003723
Lapu10g00717 623 CDD YTH 378 514 IPR007275 GO:0003723
Lapu10g00717 623 MobiDBLite consensus disorder prediction 1 39 - -
Lapu10g00717 623 MobiDBLite consensus disorder prediction 609 623 - -
Lapu10g00717 623 MobiDBLite consensus disorder prediction 593 623 - -
Lapu10g00717 623 Gene3D ph1033 like domains 353 529 - -
Lapu10g00717 623 FunFam YTH domain family 1, isoform CRA_a 356 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00717 Lapu-Chr10 9055219 9061410 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00717 K20102 - gmx:100779278 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00717 10 9055219 9061410 Lapu10g00717 10 9055219 9061410 ECH