Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00648 ATGTCGTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTGCACAAACTTGAGCAGGAATCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGTAATTGGGACGAGGTGGAGAAATACCTCTCTGGTTTCACTAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAACATGACCGGTCTAAGGCAGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACATTGGAAAACTTTAGGGAAAATGAACAATTGTCTAAGTACGGCGATACAAAGTCTGCTCGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATCGAAGCAAATCCCTTGTTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCCTAAATTGGCAGCATCAGCTTTGCAAGAATCCACGACCAAATCCCGATATAAAAACTCTTTTCGTGGATCATTCATGTGGACAGCCAAATGGTGCACGAGCTCCTTCACCTGCTAATAATCCACTACTAGGCTCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGCGCACATGGGCCTTTTCAGCCTACTCCAGCCCCAGTGCCAACACCCCTAGCTGGTTGGATGTCAAATCCTTCCACTGTAGCACATGCTGCTGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATCCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGATTATCCATCTGGAGACTCAGAGCATGTTGCTAAGAGAACAAGGCCAATGGGAATTTCGGATGAGGTAAATCTACCGGTCAATGTGTTATCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGGCTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCCATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTTGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAACGCTTGGTTTCAAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCCGCTCTTGTTAAAGATCCGGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCGAGACACATTGTTCAGATATACTCTTACAACGGTGGGGATGAAATACGACAACACTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATCAGGGTATGGGATGCTGCTTCGGGTGTGAAGCAGTATACATTTGAAGGTCATGAGGCTCCTGTTTATTCGGTCTGCCCACATTATAAAGAAAACATTCAGTTCATATTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTTTTTTCATGTGGAACAAGCAAAGATGGCGAATCCTCTATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTGAAAAGAACTTATCAAGGATTTCGGAAGCGATCTTTGGGTGTTGTTCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCTCGTATTCGTTTCAACAAGGATGGAACACTTTTAGCTGTCTCTGCAAATGAGAATGGAATCAAAATTTTAGCCAATGGGGATGGTATTCGTATGTTGCGCACACTAGAGAATTCTTTATATGATGCTTCAAGAGCATCAGAAGCCATGACAAAGCCTACAATTAATCCAATTTCTGCCGCCGCCGCTGCCGCAACTAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACATGGGTGATGTTAAACCCAGAATAAGTGAAGAATCCAATGACAAGTCAAAGGTATGGAAGCTCACTGAAATCAATGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTTAGAGTAACTAAGATCTCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTGTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCGTCCAGTGGCATCCTGATGACAAATGACATTGCGGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAGAATGATTCATACGTAATGTCTGCATCAGGAGGGAAGATATCACTGTTCAATATGATGACTTTTAAGACTATGACAACATTCATGCCTCCTCCACCTGCGGCAACTTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCCATAGGCATGGATGATTCCTCTATCCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTGTTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAACACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCCGGGAGGACACCACCTGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCCTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTGCCCGAGAGATTCATCTGCTCCAATATCGCATGCAACTTTCTCGTGTGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTTAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTGCAAGTGTCAGTTCCAACGTACAACCACTTGTAATTGCGGCTCACCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCAGATGGAGGAGTTCATGTTTTTGAACCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCCATTGAGAATGGGTCAGCAAGCAACGTGGCAGCTACTTCTGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3405 0.4302 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPSTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSEHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYNGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAASGVKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRMLRTLENSLYDASRASEAMTKPTINPISAAAAAATSAALAERASSVVAIAGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWCPRDSSAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00648 1134 SUPERFAMILY Nucleoporin domain 349 450 - -
Lapu10g00648 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Lapu10g00648 1134 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 419 970 IPR011047 -
Lapu10g00648 1134 Gene3D - 321 545 IPR015943 GO:0005515
Lapu10g00648 1134 SMART Lish 4 36 IPR006594 GO:0005515
Lapu10g00648 1134 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lapu10g00648 1134 FunFam Topless-related protein 3 740 976 - -
Lapu10g00648 1134 Gene3D - 546 692 IPR015943 GO:0005515
Lapu10g00648 1134 MobiDBLite consensus disorder prediction 1105 1134 - -
Lapu10g00648 1134 MobiDBLite consensus disorder prediction 285 304 - -
Lapu10g00648 1134 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lapu10g00648 1134 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 953 - -
Lapu10g00648 1134 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Lapu10g00648 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Lapu10g00648 1134 Gene3D - 773 1108 IPR015943 GO:0005515
Lapu10g00648 1134 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 786 1100 IPR011047 -
Lapu10g00648 1134 MobiDBLite consensus disorder prediction 1116 1134 - -
Lapu10g00648 1134 Pfam WD domain, G-beta repeat 920 953 IPR001680 GO:0005515
Lapu10g00648 1134 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Lapu10g00648 1134 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 962 IPR001680 GO:0005515
Lapu10g00648 1134 SMART ctlh 34 92 IPR006595 -
Lapu10g00648 1134 FunFam Topless-related protein 1 324 543 - -
Lapu10g00648 1134 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1116 IPR027728 GO:0006355
Lapu10g00648 1134 SMART WD40_4 585 625 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 406 445 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 871 911 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 1007 1046 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 914 953 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 831 868 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 451 492 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 345 384 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 1059 1098 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 539 582 IPR001680 GO:0005515
Lapu10g00648 1134 SMART WD40_4 495 536 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00648 Lapu-Chr10 8504243 8512501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00648 456 669 Miscellaneous Gene Families AT5G08390 23.288 1.26e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00648 - - gmx:100795759 2208.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00648 10 8504243 8512501 Lapu10g00648 10 8504243 8512501 ECH