Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00612 ATGGAGGCCTTGAACTTGCACCCCCTGCTTCCCATGCCTGTTACCCAAAACTCCATCTTTTTGCGCTCAACTGCCACCCCATTATCCACAATTCCCATTGCAAGGCCACCATTGCGTTGGAACTCAGCATCCTCCCAAACTTGCAGTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGATACCAAGAAGACCAATTTACCTGACACCATCAAAGCCGGTGACCCTGTTCTACACGAGCCCGCTCGGGAAGTTGATCCGAACGAGATAAAGTCGGAGAAAGTGCAGAAGATCATTGATGACATGATTCGGGTCATGAGGAAGGCTCCTGGAGTTGGTCTAGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAAGATACCAAAGAGTATATTAGTTATGTCCCGAAGGAAGAGGCTAAAGTCCAAGATAGAAGACCTTTTGATCTTTTGGTCATCCTGAATCCCAAGCTAGAGAAGAAGAGCAAGAAGACTGCTCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGGTTTAGAGCACTGGTGGAGCGATCCCTTGAGGTTGAGGTTACAGGTTTGGATCGCTATGGTGCGCCAATAAAAATAAACGCTTCTGGGTGGCAGGCTCGGATTTTACAACATGAGTGTGATCACTTGGATGGAACACTTTATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACCTGGAACTGCCTCTTACCCAGGGGTGCCCCAAACTTGGTCCTCGCTAA 771 0.4747 MEALNLHPLLPMPVTQNSIFLRSTATPLSTIPIARPPLRWNSASSQTCSARAGWFLGLGADTKKTNLPDTIKAGDPVLHEPAREVDPNEIKSEKVQKIIDDMIRVMRKAPGVGLAAPQIGIPFRIIVLEDTKEYISYVPKEEAKVQDRRPFDLLVILNPKLEKKSKKTALFFEGCLSVDGFRALVERSLEVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLELPLTQGCPKLGPR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00612 256 FunFam Peptide deformylase 67 250 - -
Lapu10g00612 256 NCBIfam peptide deformylase 72 234 IPR023635 GO:0042586
Lapu10g00612 256 Hamap Peptide deformylase [def]. 66 242 IPR023635 GO:0042586
Lapu10g00612 256 Pfam Polypeptide deformylase 71 234 IPR023635 GO:0042586
Lapu10g00612 256 CDD Pep_deformylase 71 227 IPR023635 GO:0042586
Lapu10g00612 256 PRINTS Peptide deformylase signature 204 233 IPR023635 GO:0042586
Lapu10g00612 256 PRINTS Peptide deformylase signature 185 203 IPR023635 GO:0042586
Lapu10g00612 256 PRINTS Peptide deformylase signature 173 184 IPR023635 GO:0042586
Lapu10g00612 256 PRINTS Peptide deformylase signature 100 129 IPR023635 GO:0042586
Lapu10g00612 256 PANTHER PEPTIDE DEFORMYLASE 62 247 IPR023635 GO:0042586
Lapu10g00612 256 Gene3D Peptide deformylase 66 255 IPR036821 -
Lapu10g00612 256 SUPERFAMILY Peptide deformylase 69 239 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00612 Lapu-Chr10 8275242 8278370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00612 K01462 - gmx:100784292 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00612 10 8275242 8278370 Lapu10g00612 10 8275242 8278370 ECH