Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00570 ATGGTAGCTGAAGAAGGAGCGCCAAAATTTCCAGGTTTTCCCTTCGAACCCTATTCGATTCAGGTTGATTTCATGAACAGCTTGTATCAATCTCTCAATCGAGGAGGCGTGTCTATGTTGGAAAGCCCAACTGGGACAGGGAAGACCATGAGTGTGATTTGCAGTGCCTTGCAATGGGTGCTTGATCGGAGGCAACAACAGGAAGCAGTTTGTGATGATAATCCAGGGAATGGCGGTGGTGGTGGAGTTGGTTCAGATGACGAACCTGATTGGATGAGGGACTTTGTCGTCAACAAAGTGGAGAACAGTAAGAAGGAAGAAAAGTGCGGGTCTGTGTGGGGAAAACATCATCATAGTAAAAAGAGTACGGAAATTCGTAAGGATTTAAGGGTTATGGGTGCAGGAGAGGAAAAGGGGTGTGAGAGTCTGCAAAAGAAAATAGATGCAGTGGATGTTAGTGATAAGGAGTTTTTATTGGCGGAATACGAGAGTGAAGATGAGAGAAGGCCAGGGAGTGTGATGTCCAAGAGGAAGGCTGTTAAAACATCCTTTAGTTCCTCTAGTGAACATGAGTCTAGCGAGGAGGAAGAGGAGGAGAAGAAGTTGAAGGTTTATTTCTGTAGTAGAACTCATTCACAGCTATCGCAGTTCATAAAGGAGTTGCGGAGGACGGTTTTCGCTAAAGAGATGAACGTTGTGAGTTTAGGGTCCAGGAAAAATCTTTGCATTAATGAAGAGGTAGTTGCACTTGGAAACTCTACACGCATAAATGAGCGATGCTTGGAACTTCAGAAGAAAAAGAAAAATGGCGCAACAAAAGTTAAGAACTTAAAAGTAGGTGCAGGGATACGCAGAACTAAGGCTACCTCTGGCTGCCCAATGCTTAGAAAACATAAAGTTCAACAAGAATTTAGGAATGAGGTATTTCAACAAAGACCCTTGGATATTGAAGATCTTGCTAATCTCGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCGAAAAGCTGATCTTGTTGTCCTACCATATCAATCTCTTCTGTCTAAATCATCTCGTGATGCACTCGGCCTGAATTTGAAATCCAATATTGTTATAATAGACGAGGCTCATAATTTAGCTGATTCACTCATCAACATGTATGACTGCAAAATTACTTTATCACAGCTGGAGACTGTGCACAACCATCTGGAACGGTACTTTGCGAGATTCCGGAATCTTTTGGGACCTACTAATCGGAGATACATTCAAACTCTCATGGTCCTCACACAAGCTTTTCTCCGAGTAGTACTTGATGATAAAGATGGAAATCTTATAGATTCTTGCTGTGATATAGATCGAGCTTCTGAAAAAAGTAGCTCCGATTTTACTATGGCCATCAATGATTTTTTATTTGAGCAAAATATAGACAATATCAACTTGGTCAAATTGCTGAAATATGTTAAGGAAAGTAATATCATGCACAAGGTTAGTGGTTATGGAGAAAAGTTGGCTACCTTGGAGAAGATACCAAAACACCATAATATGATCATGGAACATACCGAGGGGGGAAGCTGTGTATCTGCTTTCCAGGCCTTAGCTAACATATTACTATCACTGACAAACAATGATGGTGATGGAAGGATAATAATTTCCAGGTCCCGGTTAACGAGCCTCAAGAAGCAAGAAGGATATATAAAGTATGTTATGCTCAGTGGAGAGAAGATTTTTTCTGAGATTGTAGATGAAGCACACGCCGTTGTATTAGTAGGGGGAACACTTCGACCTATAGAAGAGACTAGGGAGAGACTCTTTCCATGGTTACCACCAAACCAGTTGCATTTCTTTTCATGCGGGCATATTGTTCCTCCAGATAGCATTATGCCAATTGCTCTTGCACGGGGGCCTACTGGACGCACCTTTGATTTTAGCTTCATCTCCAGAAGCTCACCAGACATGATGCGAGAGCTTGGTCTTTTGCTGTGTAATCTGGTGACTGTGGTTCCGGAAGGAATTGTTATCTTCTTCCCTTCTTTTGATTATGAAAATAGAGTATATGAGCATTGGGAATCATCTGGCATCCTTGAAAGGATTTCAAAGAGGAAGCGTGTCTTTAGGGAGCCTAGAAATAACATGGACGTTGAATCCGTTCTCAAGGAATATAAAGATACCATTTACACATTATCGGGTATGAATTCAGAAGTAAACAAAGCATCTTATAGTGGTGCAGTACTCCTTGCCGTTGTTGGCGCGAAGTTATCCGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGTATAGTCATGGTTGGACTACCCTATGCTAGCCCATCTGATATAGAGTTGTTGGAGAGGATAAAGCACATTGATCGTTTTCAAAATTTAAAGCTTGAGAATTCTAGCGTTTCTACCAGTTATGATCTATACAGTGGTCATGTTGAAGGTGGTTTTGCCATCTTAAGAAGTTGCAGTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCTATCCGTCACATTAATGACTATGCAGCAATTTTGTTGGTTGATACAAGATATGCATCTGATTCCTCAAAACGGAGTTTGGCTCACCCAGTCACCAAGCTCCCGCAGTGGATAAAAGATCGTCTTGTTTCTTCTATCAACTATGGTGAGGTACATAGGTCGTTGCATCAGTTTTTCAAACTCAAAAGCACATGCTGCCAACAGTCCCTTTAG 2739 0.4162 MVAEEGAPKFPGFPFEPYSIQVDFMNSLYQSLNRGGVSMLESPTGTGKTMSVICSALQWVLDRRQQQEAVCDDNPGNGGGGGVGSDDEPDWMRDFVVNKVENSKKEEKCGSVWGKHHHSKKSTEIRKDLRVMGAGEEKGCESLQKKIDAVDVSDKEFLLAEYESEDERRPGSVMSKRKAVKTSFSSSSEHESSEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFAKEMNVVSLGSRKNLCINEEVVALGNSTRINERCLELQKKKKNGATKVKNLKVGAGIRRTKATSGCPMLRKHKVQQEFRNEVFQQRPLDIEDLANLGRTMGTCPYYGSRSMVRKADLVVLPYQSLLSKSSRDALGLNLKSNIVIIDEAHNLADSLINMYDCKITLSQLETVHNHLERYFARFRNLLGPTNRRYIQTLMVLTQAFLRVVLDDKDGNLIDSCCDIDRASEKSSSDFTMAINDFLFEQNIDNINLVKLLKYVKESNIMHKVSGYGEKLATLEKIPKHHNMIMEHTEGGSCVSAFQALANILLSLTNNDGDGRIIISRSRLTSLKKQEGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLRPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIALARGPTGRTFDFSFISRSSPDMMRELGLLLCNLVTVVPEGIVIFFPSFDYENRVYEHWESSGILERISKRKRVFREPRNNMDVESVLKEYKDTIYTLSGMNSEVNKASYSGAVLLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIDRFQNLKLENSSVSTSYDLYSGHVEGGFAILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSLAHPVTKLPQWIKDRLVSSINYGEVHRSLHQFFKLKSTCCQQSL* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00570 912 Pfam Helicase C-terminal domain 658 871 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lapu10g00570 912 SMART Cxpdneu3 676 862 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lapu10g00570 912 CDD SF2_C_XPD 622 860 - -
Lapu10g00570 912 Gene3D - 636 876 IPR027417 -
Lapu10g00570 912 NCBIfam DNA repair helicase (rad3) 186 893 IPR013020 GO:0003678
Lapu10g00570 912 Gene3D - 178 433 IPR027417 -
Lapu10g00570 912 SMART ultradead3 13 422 IPR014001 -
Lapu10g00570 912 SMART deadxpd 9 417 IPR006554 GO:0003678|GO:0016818
Lapu10g00570 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 390 IPR027417 -
Lapu10g00570 912 Gene3D - 14 73 IPR027417 -
Lapu10g00570 912 Pfam DEAD_2 206 394 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lapu10g00570 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 423 IPR014013 GO:0005524
Lapu10g00570 912 MobiDBLite consensus disorder prediction 168 195 - -
Lapu10g00570 912 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 13 902 IPR045028 -
Lapu10g00570 912 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00570 Lapu-Chr10 7937737 7947140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00570 K11273 - gmx:106794132 1498.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00570 10 7937737 7947140 Lapu10g00570 10 7937737 7947140 ECH