Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00567 ATGGCATCTCGCCGCCGCATGTTATTGAAGGTCATAATCCTTGGAGATAGCGGGGTTGGTAAAACATCACTGATGAATCAGTATGTGAATCGTAAATTTAGTAATCAGTATAAGGCAACCATTGGTGCAGATTTTCTTACCAAGGAGGTTCAATTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGTGGTGCAGACTGCTGTGTCCTTGTATATGATGTAAATGTCATGAAATCCTTTGACAATCTTAACCACTGGCGAGAAGAATTTCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGACGTTGATGGTGGAAATAGCAGAGTTGTTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTCGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGCATAGCCAAAAATGCACTGAAGAATGAACCAGAAGAAGAAATGTACCTGCCTGACACAATCGAAGTTGGTGGTGGTGGACGGCAACAGAGATCTACTGGATGTGAATGTTGA 624 0.4215 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIEVGGGGRQQRSTGCEC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00567 207 FunFam Ras-related protein Rab7 1 189 - -
Lapu10g00567 207 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Lapu10g00567 207 SMART rab_sub_5 9 179 - -
Lapu10g00567 207 SMART ran_sub_2 14 201 - -
Lapu10g00567 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 187 IPR027417 -
Lapu10g00567 207 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Lapu10g00567 207 PRINTS Transforming protein P21 ras signature 116 129 - -
Lapu10g00567 207 PRINTS Transforming protein P21 ras signature 50 72 - -
Lapu10g00567 207 PRINTS Transforming protein P21 ras signature 9 30 - -
Lapu10g00567 207 PRINTS Transforming protein P21 ras signature 154 176 - -
Lapu10g00567 207 PRINTS Transforming protein P21 ras signature 32 48 - -
Lapu10g00567 207 ProSiteProfiles small GTPase Ras family profile. 3 207 IPR001806 GO:0003924|GO:0005525
Lapu10g00567 207 CDD Rab7 9 182 - -
Lapu10g00567 207 SMART ras_sub_4 6 179 - -
Lapu10g00567 207 ProSiteProfiles small GTPase Rab1 family profile. 4 207 - -
Lapu10g00567 207 PANTHER RAB FAMILY 1 205 - -
Lapu10g00567 207 NCBIfam small GTP-binding protein domain 10 172 IPR005225 GO:0005525
Lapu10g00567 207 Gene3D - 1 189 IPR027417 -
Lapu10g00567 207 ProSiteProfiles small GTPase Rho family profile. 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00567 Lapu-Chr10 7911479 7914508 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00567 K07897 - gmx:100305824 423.32